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Sample GSM33879

Query DataSets for GSM33879

Status

Public on Oct 28, 2004

Title

HCC066_Cy5

Sample type

RNA

Channel 1

Source name

HCC066

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 40996

Array Print: Hs-OperonV2-vB1.1p5-031303
Tissue_type: Hepatocellular Carcinoma
Sample: HCC066
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

[email protected]

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.960	0.514	1	1	1	538	199	127	70	963	223	273	83	0
1174364_1	-0.619	0.651	1	1	2	3127	724	122	66	4236	1006	253	81	0
1175152_1	-0.297	0.814	1	1	3	645	252	117	59	799	230	239	78	0
1175940_1	-0.425	0.745	1	1	4	610	220	111	59	811	175	233	103	0
1176716_1	0.293	1.226	1	1	5	1390	380	112	65	1135	279	235	190	0
1177504_1	-0.153	0.900	1	1	6	951	253	114	69	1047	274	244	183	0
1178580_1	0.008	1.006	1	1	7	1634	609	112	94	1546	471	240	82	0
1179356_1	-0.799	0.575	1	1	8	393	150	112	62	651	156	229	70	0
1180144_1	0.128	1.093	1	1	9	810	383	121	63	777	304	233	75	0
1180932_1	-1.359	0.390	1	1	10	241	136	124	60	492	118	233	71	0
1181708_1	-0.443	0.735	1	1	11	382	192	117	58	540	157	229	80	0
1182496_1	-1.452	0.365	1	1	12	162	84	115	58	344	88	233	78	-50
1183572_1	1.332	2.517	1	1	13	2010	817	117	59	879	266	230	76	0
1184348_1	-0.576	0.671	1	1	14	298	122	120	58	459	136	230	70	0
1185136_1	-0.949	0.518	1	1	15	143	96	107	56	298	136	238	62	-50
1185924_1	-0.964	0.513	1	1	16	271	143	113	63	512	101	246	68	0
1186700_1	0.126	1.091	1	1	17	498	235	115	57	562	178	259	74	0
1187488_1	0.045	1.031	1	1	18	259	145	112	54	392	131	269	74	0
1188564_1	-0.757	0.592	1	1	19	2091	916	116	63	3130	1503	249	69	0
1189340_1	-0.187	0.878	1	1	20	517	212	116	67	638	202	244	71	0

Total number of rows: 21794

Table truncated, full table size 1355 Kbytes.

Supplementary data files not provided

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