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Sample GSM33837

Query DataSets for GSM33837

Status

Public on Oct 28, 2004

Title

HCC045_Cy5

Sample type

RNA

Channel 1

Source name

HCC045

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 37000

Array Print: Hs-OperonV2-VB1.0p1-103102
Tissue_type: Hepatocellular Carcinoma
Sample: HCC045
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

[email protected]

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	0.689	1.612	1	1	1	1189	387	219	63	1137	203	399	67	0
1174364_1	0.179	1.132	1	1	2	4348	725	209	69	4900	486	416	72	0
1175152_1	1.010	2.013	1	1	3	1269	343	215	72	1043	221	401	81	0
1175940_1	1.351	2.550	1	1	4	2093	421	211	75	1299	248	394	71	0
1176716_1	0.721	1.649	1	1	5	1483	336	187	67	1358	240	394	66	0
1177504_1	0.565	1.479	1	1	6	1300	281	189	64	1328	198	407	60	0
1178580_1	0.708	1.633	1	1	7	3428	693	192	59	2824	565	394	65	0
1179356_1	1.102	2.146	1	1	8	1355	362	193	61	1057	236	393	57	0
1180144_1	0.546	1.460	1	1	9	1123	258	193	64	1174	199	393	51	0
1180932_1	0.126	1.091	1	1	10	577	184	190	69	823	103	388	55	0
1181708_1	0.698	1.622	1	1	11	735	367	186	64	807	200	392	58	0
1182496_1	-0.070	0.952	1	1	12	448	190	177	53	733	90	384	51	0
1183572_1	0.006	1.004	1	1	13	767	172	185	50	1097	151	386	53	0
1184348_1	-0.115	0.923	1	1	14	464	144	181	55	765	128	389	58	0
1185136_1	0.294	1.226	1	1	15	176	79	178	54	379	113	389	55	-50
1185924_1	0.152	1.111	1	1	16	556	149	172	56	803	118	379	48	0
1186700_1	0.287	1.220	1	1	17	533	182	170	143	742	107	377	129	0
1187488_1	1.443	2.719	1	1	18	922	263	175	56	725	92	388	54	0
1188564_1	-0.045	0.969	1	1	19	2527	275	181	52	3359	346	390	50	0
1189340_1	0.558	1.472	1	1	20	884	199	183	52	975	129	391	58	0

Total number of rows: 21775

Table truncated, full table size 1331 Kbytes.

Supplementary data files not provided

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