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Sample GSM33826

Query DataSets for GSM33826

Status

Public on Oct 28, 2004

Title

HCC040_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC040

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 43402

Array Print: Hs-OperonV2-vW1.1p10-042903
Tissue_type: Hepatocellular Carcinoma
Sample: HCC040
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

[email protected]

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1174261_1	0.131	1.095	1	1	2	3161	763	247	137	3986	749	345	124	0
1175033_1	0.814	1.758	1	1	3	5699	1292	251	140	4573	802	333	123	0
1175841_1	0.538	1.452	1	1	4	2792	674	229	130	2736	546	321	126	0
1176613_1	0.461	1.377	1	1	5	1315	508	217	131	1409	313	318	125	0
1177385_1	0.345	1.271	1	1	6	3127	722	230	134	3441	571	322	104	0
1179253_1	1.985	3.960	1	1	8	7898	1473	241	128	2960	633	315	101	0
1180025_1	1.383	2.608	1	1	9	1875	631	239	130	1184	377	326	107	0
1180833_1	0.216	1.162	1	1	10	1368	631	253	141	1657	501	344	126	0
1181605_1	0.726	1.654	1	1	11	1468	515	244	144	1342	333	330	112	0
1182377_1	1.376	2.595	1	1	12	4516	1279	225	133	2592	657	330	138	0
1184245_1	0.078	1.056	1	1	14	1185	309	224	136	1548	304	303	103	0
1185017_1	-1.130	0.457	1	1	15	363	167	221	121	703	150	278	93	0
1185825_1	0.597	1.512	1	1	16	856	279	218	130	868	174	291	100	0
1186597_1	0.302	1.233	1	1	17	4398	979	259	314	4929	800	336	227	0
1187369_1	0.226	1.169	1	1	18	836	334	365	253	951	291	400	197	0
1189237_1	-0.650	0.637	1	1	20	1107	404	230	128	2188	669	305	114	0
1190009_1	0.029	1.020	1	1	21	1006	344	216	120	1365	392	306	109	0
1190817_1	0.184	1.136	1	1	22	1040	327	207	109	1302	256	299	109	0
1191589_1	0.390	1.310	1	1	23	1154	331	220	164	1275	341	300	145	0
1192361_1	-1.354	0.391	1	1	24	335	168	222	148	713	148	318	146	0

Total number of rows: 21794

Table truncated, full table size 1381 Kbytes.

Supplementary data files not provided

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