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Sample GSM33820

Query DataSets for GSM33820

Status

Public on Oct 28, 2004

Title

HCC037_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC037

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 45224

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC037
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

[email protected]

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	0.523	1.436	1	1	1	1427	425	258	421	1053	271	194	105	0
1174364_1	0.607	1.523	1	1	2	6352	1810	263	405	4413	1464	194	75	0
1175152_1	-0.402	0.757	1	1	3	661	307	266	118	740	231	189	64	0
1175940_1	-0.253	0.839	1	1	4	930	273	251	177	1045	219	191	78	0
1176716_1	-0.120	0.920	1	1	5	1578	521	256	161	1708	351	191	81	0
1177504_1	0.163	1.120	1	1	6	1002	517	251	174	902	201	194	90	0
1178580_1	0.283	1.217	1	1	7	21431	4792	279	217	18553	3092	204	88	0
1179356_1	-0.229	0.853	1	1	8	683	226	266	388	712	210	196	86	0
1180144_1	-0.714	0.610	1	1	9	832	369	248	351	1207	270	196	94	0
1180932_1	-0.035	0.976	1	1	10	520	259	249	143	494	138	201	88	0
1181708_1	0.245	1.185	1	1	11	468	226	249	122	385	102	190	67	0
1182496_1	-1.037	0.487	1	1	12	307	141	241	114	326	86	183	70	-50
1183572_1	-0.189	0.877	1	1	13	895	243	230	139	973	230	173	62	0
1184348_1	-0.821	0.566	1	1	14	360	185	242	122	399	110	179	62	0
1185136_1	-1.208	0.433	1	1	15	386	156	249	372	526	92	192	137	0
1185924_1	-0.140	0.908	1	1	16	453	183	226	138	436	149	172	89	0
1186700_1	-0.254	0.839	1	1	17	709	240	218	155	793	213	175	87	0
1187488_1	-0.888	0.540	1	1	18	377	178	228	143	466	154	175	82	0
1188564_1	-4.381	0.048	1	1	19	236	104	245	128	203	142	181	91	-50
1189340_1	-0.485	0.714	1	1	20	466	183	244	124	505	145	177	83	0

Total number of rows: 21794

Table truncated, full table size 1390 Kbytes.

Supplementary data files not provided

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