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Sample GSM33818

Query DataSets for GSM33818

Status

Public on Oct 28, 2004

Title

HCC036_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC036

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 45222

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC036
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

[email protected]

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	1.279	2.426	1	1	1	2404	689	275	117	1468	324	377	113	0
1174364_1	1.015	2.021	1	1	2	9136	1404	297	159	5837	713	400	152	0
1175152_1	-0.063	0.958	1	1	3	705	267	276	120	939	193	382	129	0
1175940_1	-0.300	0.812	1	1	4	1199	337	257	116	1781	360	339	89	0
1176716_1	-0.038	0.974	1	1	5	2272	623	254	117	2917	664	341	115	0
1177504_1	0.076	1.054	1	1	6	1666	319	281	127	2030	410	397	134	0
1178580_1	1.155	2.227	1	1	7	15199	3417	303	125	8785	2071	468	141	0
1179356_1	-0.600	0.660	1	1	8	608	193	288	121	1072	202	469	129	0
1180144_1	-0.940	0.521	1	1	9	1087	299	285	160	2376	407	463	157	0
1180932_1	-1.052	0.482	1	1	10	576	217	315	642	1182	348	509	568	0
1181708_1	-0.887	0.541	1	1	11	492	214	291	126	935	232	473	144	0
1182496_1	-1.517	0.350	1	1	12	343	129	264	111	674	152	393	96	0
1183572_1	-0.971	0.510	1	1	13	1600	402	269	113	3640	674	396	94	0
1184348_1	-0.779	0.583	1	1	14	577	166	271	110	1036	244	383	99	0
1185136_1	-0.721	0.607	1	1	15	361	202	259	111	585	409	376	101	-50
1185924_1	-0.042	0.971	1	1	16	542	193	260	116	721	162	360	91	0
1186700_1	0.606	1.522	1	1	17	1468	375	266	114	1335	309	353	92	0
1187488_1	-0.957	0.515	1	1	18	461	171	263	108	811	184	333	97	0
1188564_1	0.922	1.894	1	1	19	296	159	264	138	345	90	324	89	-50
1189340_1	0.071	1.051	1	1	20	783	281	259	119	947	248	327	83	0

Total number of rows: 21794

Table truncated, full table size 1392 Kbytes.

Supplementary data files not provided

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