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Sample GSM33806

Query DataSets for GSM33806

Status

Public on Oct 28, 2004

Title

HCC030_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC030

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 45200

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC030
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

[email protected]

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	0.277	1.211	1	1	1	575	173	154	83	707	155	242	94	0
1174364_1	1.144	2.210	1	1	2	3018	879	152	137	1972	933	237	82	0
1175152_1	-0.517	0.699	1	1	3	344	264	146	151	616	309	237	82	0
1175940_1	-0.853	0.554	1	1	4	411	218	147	88	873	204	235	82	0
1176716_1	-0.178	0.884	1	1	5	992	590	146	87	1516	779	235	81	0
1177504_1	-0.258	0.836	1	1	6	701	934	148	85	1122	592	237	239	0
1178580_1	0.852	1.806	1	1	7	8569	1228	157	99	6475	1257	241	318	0
1179356_1	-0.634	0.644	1	1	8	357	127	160	116	660	348	251	237	0
1180144_1	-0.495	0.709	1	1	9	457	249	158	110	809	184	245	105	0
1180932_1	-0.910	0.532	1	1	10	254	107	149	88	499	244	235	121	0
1181708_1	-0.796	0.576	1	1	11	371	446	154	90	738	688	234	97	0
1182496_1	-0.811	0.570	1	1	12	269	372	151	81	534	142	257	103	0
1183572_1	0.532	1.446	1	1	13	2507	4237	161	82	2434	4100	263	92	0
1184348_1	-1.041	0.486	1	1	14	261	114	156	79	536	148	247	80	0
1185136_1	-1.063	0.479	1	1	15	305	145	154	79	640	126	218	82	0
1185924_1	-0.650	0.637	1	1	16	239	98	159	215	400	129	232	96	0
1186700_1	-0.509	0.703	1	1	17	339	136	151	104	596	135	238	110	0
1187488_1	-0.786	0.580	1	1	18	272	357	148	76	525	235	239	80	0
1188564_1	-0.627	0.647	1	1	19	173	133	158	181	268	175	237	175	-50
1189340_1	-0.557	0.680	1	1	20	345	171	157	194	607	146	237	178	0

Total number of rows: 21794

Table truncated, full table size 1359 Kbytes.

Supplementary data files not provided

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