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Sample GSM33805

Query DataSets for GSM33805

Status

Public on Oct 28, 2004

Title

HCC029_Cy5

Sample type

RNA

Channel 1

Source name

HCC029

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 44166

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC029
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

[email protected]

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	4.610	24.421	1	1	1	428	245	408	269	470	167	620	224	-50
1174364_1	-0.659	0.633	1	1	2	3321	1287	298	220	6169	1720	342	162	0
1175152_1	0.242	1.183	1	1	3	538	348	260	199	539	203	252	247	-50
1175940_1	0.961	1.947	1	1	4	1103	563	245	202	752	216	214	124	0
1176716_1	0.292	1.225	1	1	5	922	402	243	216	874	289	197	137	0
1177504_1	-0.629	0.647	1	1	6	694	347	245	224	1025	259	177	119	0
1178580_1	-0.458	0.728	1	1	7	1311	639	240	209	1973	492	177	87	0
1179356_1	-0.237	0.848	1	1	8	488	280	217	206	560	155	170	82	0
1180144_1	0.591	1.506	1	1	9	730	449	212	188	586	304	166	197	0
1180932_1	-0.737	0.600	1	1	10	328	202	243	184	341	125	168	201	-50
1181708_1	0.044	1.031	1	1	11	508	340	232	204	490	180	163	111	0
1182496_1	-0.021	0.985	1	1	12	324	238	232	211	293	121	179	120	-50
1183572_1	0.694	1.618	1	1	13	837	389	234	234	625	223	170	86	0
1184348_1	0.641	1.559	1	1	14	509	282	246	202	396	164	190	279	0
1185136_1	0.166	1.122	1	1	15	313	194	234	235	255	130	169	254	-50
1185924_1	0.798	1.739	1	1	16	488	218	243	355	398	150	226	382	0
1186700_1	0.139	1.101	1	1	17	520	357	227	186	486	159	161	88	0
1187488_1	0.695	1.619	1	1	18	462	286	234	181	349	139	177	91	0
1188564_1	1.873	3.663	1	1	19	247	200	244	188	163	62	172	96	-50
1189340_1	0.189	1.140	1	1	20	704	433	241	169	670	229	174	91	0

Total number of rows: 21794

Table truncated, full table size 1387 Kbytes.

Supplementary data files not provided

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