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Sample GSM33748

Query DataSets for GSM33748

Status

Public on Oct 28, 2004

Title

HCC001_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC001

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 44071

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC001
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

[email protected]

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.172	0.887	1	1	1	364	175	147	113	495	142	190	144	0
1174364_1	1.034	2.047	1	1	2	10361	2075	144	102	6413	1564	189	708	0
1175152_1	-0.027	0.982	1	1	3	445	249	142	136	574	340	189	176	0
1175940_1	0.921	1.894	1	1	4	771	323	153	166	601	177	194	188	0
1176716_1	0.425	1.343	1	1	5	889	444	159	145	867	367	189	127	0
1177504_1	1.352	2.552	1	1	6	1265	440	154	147	735	264	192	152	0
1178580_1	0.866	1.822	1	1	7	3241	840	152	156	2306	684	192	141	0
1179356_1	-0.033	0.978	1	1	8	410	240	149	134	525	148	192	152	0
1180144_1	-0.052	0.965	1	1	9	748	395	154	162	965	338	197	203	0
1180932_1	0.100	1.072	1	1	10	325	174	154	160	402	112	203	287	0
1181708_1	0.102	1.073	1	1	11	429	270	152	111	522	176	200	215	0
1182496_1	-1.482	0.358	1	1	12	226	144	160	205	441	495	211	155	0
1183572_1	-0.110	0.927	1	1	13	673	355	153	275	904	266	204	290	0
1184348_1	-1.181	0.441	1	1	14	304	231	153	126	629	224	202	290	0
1185136_1	-0.141	0.907	1	1	15	183	118	127	138	273	159	196	222	-50
1185924_1	-0.899	0.536	1	1	16	235	129	137	199	421	329	193	305	0
1186700_1	0.402	1.322	1	1	17	372	242	141	123	416	127	198	113	0
1187488_1	-0.428	0.743	1	1	18	308	203	140	106	478	183	196	115	0
1188564_1	0.826	1.772	1	1	19	174	116	147	106	218	162	199	224	-50
1189340_1	0.033	1.023	1	1	20	599	276	152	124	747	238	202	123	0

Total number of rows: 21794

Table truncated, full table size 1377 Kbytes.

Supplementary data files not provided

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