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Sample GSM337200 Query DataSets for GSM337200
Status Public on Jan 25, 2009
Title Individual_4598_NN_sample
Sample type RNA
 
Source name skin_tissue
Organism Homo sapiens
Characteristics normal skin from controls
Extracted molecule total RNA
Extraction protocol Two biopsies were taken from each patient; one 6mm punch biopsy was obtained from lesional skin of each patient (involved sample) and the other from non-lesional skin (uninvolved sample), taken at least 10 cm away from any active plaque. One biopsy was obtained from each healty control. The non-lesional and control biopsies were taken from the buttocks or upper thighs.
Biopsies were snap-frozen in liquid nitrogen, stored at -80°C. At processing the biopsy samples were homogenized while still frozen and total RNA isolation was performed using RNeasy kit protocol (Qiagen, Chatsworth, Ca, USA).
Label biotin
Label protocol Procedure used standard Affymetrix protocol.
 
Hybridization protocol Procedure used standard Affymetrix protocol.
Scan protocol Procedure used standard Affymetrix protocol.
Description 4598.NN
Data processing The raw data from 180 microarrays were processed using the Robust Multichip Average (RMA) method. The expression values in the table were after adjustment of RMA expression values (on the log scale) to account for batch and sex effects.
 
Submission date Oct 27, 2008
Last update date Aug 28, 2018
Contact name Goncalo Abecasis
E-mail(s) [email protected]
Organization name University of Michigan
Department Biostatistics
Street address 1420 Washington Heights
City Ann Arbor
State/province MI
ZIP/Postal code 48105
Country USA
 
Platform ID GPL570
Series (1)
GSE13355 Gene expression data of skin from psoriatic patients and normal controls
Relations
Reanalyzed by GSM973074
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE RMA expression values (on the log scale)

Data table
ID_REF VALUE
1007_s_at 0.367991
1053_at -0.057208
117_at -0.527403
121_at -0.167975
1255_g_at -0.063135
1294_at -0.060888
1316_at 0.13916
1320_at -0.192299
1405_i_at -0.370054
1431_at -0.842812
1438_at 0.734109
1487_at 0.277994
1494_f_at 0.241379
1552256_a_at 0.271369
1552257_a_at -0.050768
1552258_at -0.114175
1552261_at -0.233468
1552263_at -0.487563
1552264_a_at -1.209823
1552266_at -0.077484

Total number of rows: 54675

Table truncated, full table size 1080 Kbytes.




Supplementary file Size Download File type/resource
GSM337200.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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