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Sample GSM326104 Query DataSets for GSM326104
Status Public on Jul 01, 2009
Title I021
Sample type RNA
 
Source name Whole blood from septic patient with other infections
Organism Homo sapiens
Characteristics Age: 54
Gender: F
Ethnicity: Not Hispanic or Latino
Race: Asian
Illness: Sepsis/Other infections
Treatment: Ceftazidime,Cloxacilin
Pathogen: Enterococcus spp.
Extracted molecule total RNA
Extraction protocol Tempus Spin Isolation Kit
Label biotin
Label protocol Biotinylated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion
 
Hybridization protocol Hybridize 6-Sample Beadchip
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description The subject was infected with Enterococcus spp.
Data processing The data were analysed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Oct 02, 2008
Last update date May 29, 2009
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6106
Series (1)
GSE13015 Genomic Transcriptional Profiling Identifies a Blood Biomarker Signature for the Diagnosis of Septicemic Melioidosis

Data table header descriptions
ID_REF Illumina probe set identifier
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
6960451 30.25516 0
2850504 2.104146 0.2651852
7560397 3.941284 0.1385185
5360747 -2.653741 0.7525926
2600731 702.415 0
3990110 8.036363 0.02
2120309 -2.522461 0.742963
6420474 34.03132 0
670095 -1.229121 0.6066667
130367 -0.3550809 0.5207407
3830242 -5.363751 0.9444444
6480041 2.360291 0.2422222
7510608 8.237326 0.01851852
1570494 32.03055 0
1740092 6.676344 0.04740741
3440520 2.507915 0.2296296
6520451 3.718304 0.1548148
780746 4.544662 0.1088889
150546 -0.6895242 0.5525926
2640192 3.667895 0.157037

Total number of rows: 48687

Table truncated, full table size 1191 Kbytes.




Supplementary file Size Download File type/resource
GSM326104_I021.xls.gz 3.0 Mb (ftp)(http) XLS
Processed data included within Sample table

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