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Sample GSM326091 Query DataSets for GSM326091
Status Public on Jul 01, 2009
Title M017
Sample type RNA
 
Source name Whole blood from patient with septicemic melioidosis
Organism Homo sapiens
Characteristics Age: 52
Gender: F
Ethnicity: Not Hispanic or Latino
Race: Asian
Illness: Sepsis/Melioidosis
Treatment: Norfloxacin, Ceftazolin
Pathogen: B.pseudomallei
Extracted molecule total RNA
Extraction protocol Tempus Spin Isolation Kit
Label biotin
Label protocol Biotinylated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion
 
Hybridization protocol Hybridize 6-Sample Beadchip
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description The subject was infected with B.pseudomallei
Data processing The data were analysed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Oct 02, 2008
Last update date May 29, 2009
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6106
Series (1)
GSE13015 Genomic Transcriptional Profiling Identifies a Blood Biomarker Signature for the Diagnosis of Septicemic Melioidosis

Data table header descriptions
ID_REF Illumina probe set identifier
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
6960451 48.38955 0
2850504 -1.701362 0.6891692
7560397 -1.352389 0.6513353
5360747 -1.568361 0.675816
2600731 1082.87 0
3990110 2.778083 0.1854599
2120309 -5.728611 0.9844214
6420474 20.3832 0
670095 1.354284 0.3086053
130367 -0.0791238 0.4903561
3830242 -4.86788 0.9651335
6480041 -2.723523 0.8034124
7510608 2.562547 0.1980712
1570494 46.29963 0
1740092 1.618981 0.2848665
3440520 3.212718 0.1609792
6520451 8.688643 0.002967359
780746 1.281456 0.3160237
150546 -1.788038 0.6988131
2640192 0.2316394 0.4532641

Total number of rows: 48687

Table truncated, full table size 1191 Kbytes.




Supplementary file Size Download File type/resource
GSM326091_M017.xls.gz 3.0 Mb (ftp)(http) XLS
Processed data included within Sample table

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