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Sample GSM322416 Query DataSets for GSM322416
Status Public on Sep 20, 2008
Title LEC_siRNA_Prox1
Sample type RNA
 
Source name Primary human lymphatic endothelial cells with Prox1 knockdown
Organism Homo sapiens
Characteristics Primary lymphatic endothelial cells from human foreskin, siRNA for Prox1
Extracted molecule total RNA
Extraction protocol Tri-reagent
Label biotin
Label protocol Followed Affymetrix One Cycle Expression kit manual
 
Hybridization protocol Followed Affymetrix One Cycle Expression kit manual
Scan protocol Followed Affymetrix One Cycle Expression kit manual
Description Followed Affymetrix One Cycle Gene Expression kit manual
Data processing MAS5
 
Submission date Sep 18, 2008
Last update date Aug 28, 2018
Contact name Young-Kwon Hong
Organization name University of Southern California
Street address 1450 Biggy St. NRT6501
City Los Angeles
State/province CA
ZIP/Postal code 90033
Country USA
 
Platform ID GPL570
Series (1)
GSE12846 Gene expression profiles of lymphatic endothelial cells after knockdown of Prox1 and/or NR2F2
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE Value
ABS_CALL Absent call
DETECTION P-VALUE p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1080.01 P 0.000340305
AFFX-BioB-M_at 1405 P 4.42873e-05
AFFX-BioB-3_at 816.533 P 4.42873e-05
AFFX-BioC-5_at 2599.81 P 5.16732e-05
AFFX-BioC-3_at 3839.03 P 4.42873e-05
AFFX-BioDn-5_at 6158.15 P 4.42873e-05
AFFX-BioDn-3_at 11635.9 P 6.02111e-05
AFFX-CreX-5_at 26729.3 P 5.16732e-05
AFFX-CreX-3_at 32360.7 P 4.42873e-05
AFFX-DapX-5_at 55.8403 P 0.0309764
AFFX-DapX-M_at 149.919 P 0.00687065
AFFX-DapX-3_at 331.605 P 0.000224668
AFFX-LysX-5_at 21.4971 A 0.300606
AFFX-LysX-M_at 72.4112 A 0.116113
AFFX-LysX-3_at 124.178 P 0.000146581
AFFX-PheX-5_at 27.5119 A 0.368438
AFFX-PheX-M_at 2.72487 A 0.852082
AFFX-PheX-3_at 59.4187 A 0.102165
AFFX-ThrX-5_at 6.94236 A 0.672921
AFFX-ThrX-M_at 56.4556 M 0.0629293

Total number of rows: 54675

Table truncated, full table size 1640 Kbytes.




Supplementary file Size Download File type/resource
GSM322416.CEL.gz 4.7 Mb (ftp)(http) CEL
GSM322416.CHP.gz 298.6 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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