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Sample GSM3166 Query DataSets for GSM3166
Status Public on Mar 16, 2003
Title GC2_CT18_LT2_3
Sample type genomic
 
Channel 1
Source name Typhi CT18 overnight
Organism Salmonella enterica
Extracted molecule genomic DNA
 
Channel 2
Source name Typhimurium LT2 overnight
Organism Salmonella enterica
Extracted molecule genomic DNA
 
 
Description slide 2D444-03
Keywords = Salmonella
 
Submission date Dec 13, 2002
Last update date May 27, 2005
Contact name Michael McClelland
E-mail(s) [email protected]
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE113 CT18_LT2_STv2

Data table header descriptions
ID_REF
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
VALUE log ratio of PRE_VALUE
CH2%/CH1% ch2 % of total / ch1 % of total
PRE_VALUE ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL VALUE CH2%/CH1% PRE_VALUE
1 2030 40170 5056.584961 26.191177 4075.869141 93.999405 170.381531 15900 55.198635 0.916409 0.892494 0.996902 53.793798 0.872034 7108.638672 43.044117 7464.40625 124.410423 185.925949 19100 55.198635 0.953647 0.780396 0.996178 57.13861 0.843771 1 1 1 1 1 1 1 1 1 1 1 1 1 5030.393784 7065.594555 0.025492154 0.040056949 -0.1962713 1.571344189 0.63639781
2 2290 40180 2057.464111 8.779411 1829.876221 33.30629 175.896927 12500 50.808067 0.922693 0.955582 0.999123 61.774041 0.862006 1650.491089 115.911766 1847.00061 204.20488 187.969162 16900 50.808067 0.956325 0.949387 0.994705 8.082525 0.840056 1 1 1 1 1 1 1 1 1 1 1 1 1 2048.6847 1534.579323 0.010381968 0.008699985 0.0767613 0.837989955 1.193331727
3 2550 40190 8323.150391 69.970589 6623.325684 225.392059 170.568253 16000 50.160046 0.908466 0.856529 0.994179 36.927434 0.871694 7510.185059 76.470589 7178.530762 144.395966 181.244553 18900 50.160046 0.962624 0.850319 0.995171 52.011045 0.852283 1 1 1 1 1 1 1 1 1 1 1 1 1 8253.179802 7433.71447 0.041824029 0.042143929 -0.0033093 1.007648734 0.992409325
4 2790 40190 4921.067871 40.338234 4218.76709 138.17981 185.583237 16200 42.925201 0.949755 0.908554 0.995621 35.613509 0.844394 4097.192383 68.720589 4096.576172 151.267075 184.723648 18700 42.925201 0.961519 0.910629 0.995346 27.085818 0.845957 1 1 1 1 1 1 1 1 1 1 1 1 1 4880.729637 4028.471794 0.024733712 0.0228386 0.0346203 0.923379377 1.082978486
5 3040 40200 5730.508789 16.617647 4655.823242 103.674866 183.513474 16900 36.106598 0.94922 0.89994 0.998421 55.273848 0.848157 5597.898438 62.941177 5534.61377 147.612335 187.290573 19700 36.106598 0.965969 0.879189 0.99604 37.922972 0.84129 1 1 1 1 1 1 1 1 1 1 1 1 1 5713.891142 5534.957261 0.028955863 0.031379312 -0.0349073 1.083694587 0.922769212
6 3290 40200 5239.369629 46.029411 4828.928223 147.882263 182.12056 16500 36.106598 0.952385 0.891884 0.995979 35.429331 0.85069 4863.92627 93.794121 5002.555664 185.328476 182.992371 19000 36.106598 0.951219 0.888893 0.995224 26.244894 0.849105 1 1 1 1 1 1 1 1 1 1 1 1 1 5193.340218 4770.132149 0.026317906 0.027043292 -0.0118083 1.027562463 0.97317685
7 3540 40200 4705.288574 54.75 3841.853516 128.43483 183.339935 16300 36.106598 0.946861 0.901871 0.996231 36.635612 0.848473 4216.884277 72.897057 4089.606934 172.3181 186.268051 19000 36.106598 0.961138 0.907051 0.995781 24.471511 0.843149 1 1 1 1 1 1 1 1 1 1 1 1 1 4650.538574 4143.98722 0.02356719 0.023493491 0.0013603 0.996872811 1.003136999
8 3800 40210 3639.543457 38.838234 3234.028564 123.9412 189.150833 17300 40.475384 0.964158 0.925621 0.997025 29.365082 0.837908 3553.152588 72.352943 3169.618896 172.007187 185.925949 17700 40.475384 0.952855 0.925934 0.994888 20.657001 0.843771 1 1 1 1 1 1 1 1 1 1 1 1 1 3600.705223 3480.799645 0.018247027 0.019733684 -0.0340163 1.081473923 0.924663997
9 4040 40210 5063.494141 68.044121 4243.752441 180.107635 169.820145 16400 31.061224 0.929768 0.898987 0.996567 28.113712 0.873054 4395.088379 90.514709 4202.741211 171.122498 182.64415 18100 31.061224 0.946998 0.903831 0.995087 25.683872 0.849738 1 1 1 1 1 1 1 1 1 1 1 1 1 4995.45002 4304.57367 0.025315072 0.024403903 0.0159203 0.964006853 1.037337024
10 4300 40220 4795.757324 37.14706 4352.071777 115.231277 179.656982 16900 38.721699 0.944455 0.899666 0.995659 41.618538 0.855169 3744.598877 72.955879 3834.075684 143.10318 181.595459 19200 38.721699 0.95443 0.911125 0.995934 26.167126 0.851645 1 1 1 1 1 1 1 1 1 1 1 1 1 4758.610264 3671.642998 0.024114857 0.020815632 0.0638953 0.863187027 1.158497485
11 4540 40230 4166.858887 28.558823 3775.971191 88.191849 182.469788 17700 29.782984 0.9459 0.91201 0.997284 47.247665 0.850055 4359.318359 55.235294 4204.501465 126.477669 187.120529 17900 29.782984 0.954973 0.901314 0.996063 34.467099 0.841599 1 1 1 1 1 1 1 1 1 1 1 1 1 4138.300064 4304.083065 0.020971357 0.024401122 -0.0657833 1.163545206 0.859442328
12 4790 40230 2354.668701 126.544121 1799.890625 612.061157 176.43898 17200 29.782984 0.936217 0.953995 0.996307 3.847113 0.828975 2131.098633 262.926483 1984.478149 981.588501 187.799744 20300 29.782984 0.970016 0.953629 0.960159 2.171071 0.578952 1 1 1 1 1 1 1 1 1 1 1 0 1 2228.12458 1868.17215 0.011291302 0.010591221 0.0277983 0.937998229 1.066100094
13 5040 40230 7401.491211 81.867645 5901.699219 197.898956 172.239624 16900 29.782984 0.913753 0.87664 0.994431 37.400355 0.868655 5686.227539 57.441177 5722.647461 153.465958 186.438858 20200 29.782984 0.958683 0.877975 0.9944 37.052045 0.842838 1 1 1 1 1 1 1 1 1 1 1 1 1 7319.623566 5628.786362 0.037093115 0.031911257 0.0653493 0.860301368 1.162383366
14 5300 40240 4311.526855 58.867645 3898.744629 151.999695 182.992371 16700 42.680164 0.952325 0.913345 0.995308 28.365365 0.849105 3562.494385 85.573532 3485.519043 201.643494 188.645309 18000 42.680164 0.966498 0.920776 0.996117 17.667292 0.838827 1 1 1 1 1 1 1 1 1 1 1 1 1 4252.65921 3476.920853 0.021550886 0.019711694 0.0387413 0.914658169 1.093304618
15 5550 40240 7157.459473 37.264706 5333.083008 101.853806 174.443207 18500 42.680164 0.93159 0.887764 0.997025 70.271891 0.864649 6844.623047 34.691177 5916.493164 105.898323 185.754669 19900 42.680164 0.949777 0.879364 0.996513 64.633913 0.844082 1 1 1 1 1 1 1 1 1 1 1 1 1 7120.194767 6809.93187 0.036082484 0.038607521 -0.0293753 1.069979576 0.934597278
16 5800 40250 4973.108398 57.955883 3903.525391 171.881027 176.799423 16600 47.77771 0.936437 0.909889 0.995583 28.933434 0.860365 4160.65625 64.602943 3718.731201 167.148972 187.630173 18900 47.77771 0.957312 0.916656 0.99498 24.891905 0.840672 1 1 1 1 1 1 1 1 1 1 1 1 1 4915.152515 4096.053307 0.024908155 0.02322174 0.0304473 0.932294659 1.072622256
17 6060 40270 3771.150879 39.617645 3365.84082 115.858124 179.479706 15900 68.398781 0.944552 0.917419 0.996231 32.549732 0.855491 3114.375 88.132355 2948.127441 255.374924 181.945694 17600 68.398781 0.951852 0.931053 0.99437 12.195305 0.851008 1 1 1 1 1 1 1 1 1 1 1 1 1 3731.533234 3026.242645 0.018910015 0.017156666 0.0422593 0.907279353 1.10219636
18 6310 40260 4967.193359 38.720589 3769.154053 123.828461 186.438858 18100 61.784142 0.951895 0.914421 0.997612 40.113503 0.842838 4324.687012 78.794121 3940.079102 175.676147 187.799744 21100 61.784142 0.958918 0.915901 0.994301 24.617383 0.840364 1 1 1 1 1 1 1 1 1 1 1 1 1 4928.47277 4245.892891 0.024975657 0.024071225 0.0160193 0.963787451 1.037573169
19 2040 40420 3355.316162 34.029411 2825.803711 97.996033 177.876389 13600 59.332508 0.943106 0.932549 0.996445 34.239306 0.858407 2692.5 63.220589 3066.696533 132.991394 185.411636 17000 59.332508 0.944993 0.923607 0.995453 20.245671 0.844706 1 1 1 1 1 1 1 1 1 1 1 1 1 3321.286751 2629.279411 0.016831039 0.014906164 0.0527453 0.885635389 1.129132838
20 2290 40430 5834.231934 29.485294 5876.67041 96.604828 163.906555 15100 50.808067 0.878853 0.867508 0.997162 60.392757 0.883806 5514.005859 61.470589 6422.756348 130.763138 187.120529 17600 50.808067 0.96104 0.851105 0.996506 42.167892 0.841599 1 1 1 1 1 1 1 1 1 1 1 1 1 5804.74664 5452.53527 0.029416285 0.030912038 -0.0215403 1.050847776 0.951612615

Total number of rows: 5184

Table truncated, full table size 1799 Kbytes.




Supplementary data files not provided
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