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Sample GSM315550 Query DataSets for GSM315550
Status Public on Oct 01, 2008
Title AmphimedonAdult1
Sample type SRA
 
Source name adult tissue
Organism Amphimedon queenslandica
Characteristics adult tissue
Treatment protocol Stored at -80
Extracted molecule total RNA
Extraction protocol Trizol extracted whole RNA
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer
 
Description small RNA sequencing
15-30 nt size selection
Data processing The processed files are collapsed to unique sequences (1 line per sequence); the second (numeric) value in each column is the number of times each unique sequence was sequenced.
 
Submission date Aug 26, 2008
Last update date May 15, 2019
Contact name andrew grimson
Organization name Whitehead Institute
Lab Bartel
Street address 9 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platform ID GPL9304
Series (1)
GSE12578 The Early Origins and Evolution of microRNAs and piRNAs in Animals
Relations
SRA SRX003101
BioSample SAMN02195199

Data table header descriptions
SEQUENCE sequence
COUNT counts

Data table
SEQUENCE COUNT
GCATTGATGGTTCAGTGGTAGAATTCTCGCCTTCGT 43351
TCCCATGTGGTCTAGTGGTTAGGATCCGGCGCTTCG 29769
GCATTGATGGTTCAGTGGTAGAATTCTCGCCTCGTT 20940
GCATTGATGGTTCAGTGGTAGAATTCTCTCGTATGC 18576
TCCCATGTGGTCTAGTGGTTAGGGTCCGGCGCTTCG 18233
GCATTGATGGTTCAGTGGTAGAATTCTCGCCTCGTA 16122
GCATTGATGGTTCAGTGGTAGAATTCTCTCGTATTC 13173
TCCCATGTGGTCTAGTGGTTAGGGTCCGGCTCGTTT 11919
TAGATTGGGCTTGGTCGGCAGATCGTATGCCGTCTT 9573
GGTCCGATGGTGTAACGGTTAGCACCTGGGGCTTCG 9566
GCATTGATGGTTCAGTGGTAGAATTCTCGCTCGTAT 9472
GCATTGATGGTTCAGTGGTAGAATTCTCGCTCGTTT 9166
TCCCATGTGGTCTAGTGGTTAGGGTCCGGCGCTTTG 7651
TCCCATGTGGTCTAGTGGTTAGGATCCGGCTCGTTT 7498
AGCGTGTAGGGATCCAAATCGTATGCCGTCTTCTGC 7412
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 7034
GGGAGTATAGCTCAGTGGTAGAGCATTCGACTTCGT 5837
TCCCATGTGGTCTAGTGGTTAGGATCCGGCGCTTTG 5363
GCATTGATGGTTCAGTGGTAGAATTCTCTCGTTTTC 4744
GCATTGATGGTTCAGTGGTAGAATTCTCGCCTTCTT 4440

Total number of rows: 861251

Table truncated, full table size 32815 Kbytes.




Supplementary file Size Download File type/resource
GSM315550.txt.gz 8.3 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Processed data included within Sample table
Processed data provided as supplementary file
Raw data are available in SRA
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