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Sample GSM314306 Query DataSets for GSM314306
Status Public on Dec 22, 2008
Title Log-phase wild-type bacteria grown at 37C
Sample type RNA
 
Source name Wild-type bacteria of log-phase cultures grown at 37C
Organism Shigella flexneri
Characteristics serotype: 2a
strain: 2457T
genotype: wild-type
growth phase: log-phase
temperature: 37C
Treatment protocol Wild-type bacteria were cultured in LB broth into log-phase (OD=0.6) at 37 degrees Celsius.
Growth protocol Wild-type bacteria were maintained on TSA plates at 30 degrees Celsius and cultured in LB broth at 37 degrees Celsius.
Extracted molecule total RNA
Extraction protocol use QIAGEN RNAeasy mini kit
Label Cy3
Label protocol Available at manufacturer's website: www.nimblegen.com
 
Hybridization protocol Available at manufacturer's website: www.nimblegen.com
Scan protocol Available at manufacturer's website: www.nimblegen.com
Description Log-phase wild-type bacteria grown at 37 degrees Celsius.
Data processing Available at manufacturer's website: www.nimblegen.com
 
Submission date Aug 21, 2008
Last update date Jun 02, 2010
Contact name Li Zhu
E-mail(s) [email protected]
Organization name Beijing Institute of Biotechnology
Department State Key Laboratory of Pathogens and Biosecurity
Street address 20 Dongdajie, Fengtai District
City Beijing
ZIP/Postal code 100071
Country China
 
Platform ID GPL7185
Series (1)
GSE16535 The expression profiles of log-phase and stationary-phase cells of Shigella flexneri grown at 30 degrees and 37 degrees Celsius

Data table header descriptions
ID_REF
VALUE normalized signal intensity
SE_EXPRS signal confidence

Data table
ID_REF VALUE SE_EXPRS
TI198215051200000001 14657.1949 0.9826
TI198215051200000002 938.7455 0.9357
TI198215051200000003 1379.5327 0.9468
TI198215051200000004 1266.785 0.9487
TI198215051200000005 5336.9551 0.9707
TI198215051200000006 1239.7431 0.9429
TI198215051200000007 7507.6828 0.9845
TI198215051200000008 4557.1663 0.9671
TI198215051200000009 2820.7517 0.9634
TI198215051200000010 487.9634 0.9276
TI198215051200000011 508.8716 0.9297
TI198215051200000012 517.5872 0.9207
TI198215051200000013 16197.7229 0.969
TI198215051200000014 5031.4828 0.9693
TI198215051200000015 2305.3982 0.9595
TI198215051200000016 4586.738 0.967
TI198215051200000017 1742.1939 0.9391
TI198215051200000018 7699.1007 0.9801
TI198215051200000019 36788.9076 0.9655
TI198215051200000020 18077.1166 0.9524

Total number of rows: 4068

Table truncated, full table size 149 Kbytes.




Supplementary file Size Download File type/resource
GSM314306.pair.gz 3.9 Mb (ftp)(http) PAIR
Processed data included within Sample table

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