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Sample GSM314301 Query DataSets for GSM314301
Status Public on Dec 22, 2008
Title Log-phase mutant bacteria grown at 30C
Sample type RNA
 
Source name Mutant bacteria of log-phase cultures grown at 30C
Organism Shigella flexneri
Characteristics strain: shigella flexneri 2a str. 2457T: a virulence plasmid-free strain (delta pSF strain)
genotype: mutant
growth phase: log-phase
temperature: 30C
Treatment protocol Mutant bacteria were cultured into log-phase (OD=0.6) at 30 degree
Growth protocol Mutant bacteria were maintained at TSA plates at 30 degree and cultured in LB broth at 30 degree
Extracted molecule total RNA
Extraction protocol use QIAGEN RNAeasy mini kit
Label Cy3
Label protocol Available at manufacturer's website: www.nimblegen.com
 
Hybridization protocol Available at manufacturer's website: www.nimblegen.com
Scan protocol Available at manufacturer's website: www.nimblegen.com
Description Log-phase mutant bacteria grown at 30 degree
Data processing Available at manufacturer's website: www.nimblegen.com
 
Submission date Aug 21, 2008
Last update date Jun 02, 2010
Contact name Li Zhu
E-mail(s) [email protected]
Organization name Beijing Institute of Biotechnology
Department State Key Laboratory of Pathogens and Biosecurity
Street address 20 Dongdajie, Fengtai District
City Beijing
ZIP/Postal code 100071
Country China
 
Platform ID GPL7185
Series (1)
GSE12535 The expression profiles analysis of a virulence plasmid-cured strain of shigella flexneri

Data table header descriptions
ID_REF
VALUE normalized signal intensity
SE_EXPRS signal confidence

Data table
ID_REF VALUE SE_EXPRS
TI198215051200000001 2491.861433 0.8682
TI198215051200000002 2115.845233 0.828533333
TI198215051200000003 2806.541533 0.861933333
TI198215051200000004 3695.530033 0.8683
TI198215051200000005 3934.645067 0.8866
TI198215051200000006 2839.085767 0.848733333
TI198215051200000007 34277.8254 0.9307
TI198215051200000008 9836.9198 0.898833333
TI198215051200000009 2165.414767 0.8636
TI198215051200000010 1473.403233 0.8427
TI198215051200000011 742.5700667 0.790266667
TI198215051200000012 1317.028967 0.841466667
TI198215051200000013 32185.7347 0.952666667
TI198215051200000014 9153.150867 0.910433333
TI198215051200000015 3482.574733 0.840933333
TI198215051200000016 4589.204867 0.8847
TI198215051200000017 2866.121933 0.816933333
TI198215051200000018 31223.68873 0.9804
TI198215051200000019 56213.58283 0.955633333
TI198215051200000020 43316.06577 0.928333333

Total number of rows: 4068

Table truncated, full table size 169 Kbytes.




Supplementary file Size Download File type/resource
GSM314301.pair.gz 3.8 Mb (ftp)(http) PAIR
Processed data included within Sample table

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