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Sample GSM308449 Query DataSets for GSM308449
Status Public on Jul 25, 2022
Title Primary breast cancer, sample 193
Sample type RNA
 
Source name Snap frozen primary breast tumor
Organism Homo sapiens
Characteristics site of relapse (brain or other): other
survival time (months): 47
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with RNABee (Campro, Veenendaal, the Netherlands) according to the manufacturer procedure
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol on Affymetrix scanner 3000
Description EMC204_193
1971.CEL
Data processing MAS5 parameters from affy R package, available at www.bioconductor.org using default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 600.
 
Submission date Jul 25, 2022
Last update date Jul 25, 2022
Contact name Marcel Smid
E-mail(s) [email protected]
Organization name Erasmus Medical Centre
Department Medical Oncology
Street address Dr. Molewaterplein 50-60
City Rotterdam
ZIP/Postal code 3015GE
Country Netherlands
 
Platform ID GPL570
Series (1)
GSE12276 Expression data from primary breast tumors
Relations
Reanalyzed by GSE31519
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity

Data table
ID_REF VALUE
1007_s_at 3869.287811
1053_at 534.0986966
117_at 1928.177759
121_at 751.0978218
1255_g_at 136.6175133
1294_at 634.2350525
1316_at 169.3088067
1320_at 138.6236259
1405_i_at 11603.51544
1431_at 71.34533621
1438_at 2260.225901
1487_at 1012.358617
1494_f_at 181.9128023
1552256_a_at 1643.807853
1552257_a_at 1502.578985
1552258_at 102.046607
1552261_at 22.74631254
1552263_at 502.3600693
1552264_a_at 1175.899159
1552266_at 157.8342818

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM308449.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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