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Sample GSM308327 Query DataSets for GSM308327
Status Public on Jul 25, 2022
Title Primary breast cancer, sample 71
Sample type RNA
 
Source name Snap frozen primary breast tumor
Organism Homo sapiens
Characteristics site of relapse (brain or other): local
survival time (months): 73
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with RNABee (Campro, Veenendaal, the Netherlands) according to the manufacturer procedure
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol on Affymetrix scanner 3000
Description EMC204_71
2417.CEL
Data processing MAS5 parameters from affy R package, available at www.bioconductor.org using default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 600.
 
Submission date Jul 25, 2022
Last update date Jul 25, 2022
Contact name Marcel Smid
E-mail(s) [email protected]
Organization name Erasmus Medical Centre
Department Medical Oncology
Street address Dr. Molewaterplein 50-60
City Rotterdam
ZIP/Postal code 3015GE
Country Netherlands
 
Platform ID GPL570
Series (1)
GSE12276 Expression data from primary breast tumors
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity

Data table
ID_REF VALUE
1007_s_at 7918.98
1053_at 797.988
117_at 142.776
121_at 833.424
1255_g_at 11.136
1294_at 602.256
1316_at 183.228
1320_at 11.172
1405_i_at 1013.544
1431_at 79.836
1438_at 920.964
1487_at 1291.128
1494_f_at 3099.792
1552256_a_at 2819.496
1552257_a_at 1364.28
1552258_at 111.372
1552261_at 197.796
1552263_at 86.028
1552264_a_at 314.508
1552266_at 9.66

Total number of rows: 54675

Table truncated, full table size 975 Kbytes.




Supplementary file Size Download File type/resource
GSM308327.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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