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Sample GSM30828 Query DataSets for GSM30828
Status Public on Oct 12, 2004
Title RD01D011
Sample type RNA
 
Source name whole head
Organism Drosophila melanogaster
Extracted molecule total RNA
 
Description Whole heads of Canton-S flie were seperated from bodies using liquid nitrogen freezing and sieve (0.710 mm) seperation. About 100 seperated whole fly heads were homoginized in 0.5 ml Trizol (Invitrogen). Then 0.1 ml chloroform was added. After vigorous vortexing and centrifugation at 12,000 g for 15 minuntes, 0.28 ml of the aquous phase sample was transfered to a new tube, mixed with 0.25 ml 2-isopropanol, then loaded on a RNeasy column (Qiagen), the RNA sample was further purified by the RNeasy kit. Targets were produced using standard Affymetrix procedures from about 10 ug of total RNA. 10 ug of cRNA was used for hybridization.
This sample is whole head sample 5 of Canton-S.
Keywords = Drosophila
Keywords = mRNA tagging
Keywords = photoreceptor cell-specific genes
 
Submission date Sep 21, 2004
Last update date May 27, 2005
Contact name Zhiyong Yang
E-mail(s) [email protected]
Phone 713-7988168
Organization name Baylor College of Medicine
Street address
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL72
Series (1)
GSE1790 Isolation of mRNA from fly photoreceptor cells by mRNA tagging

Data table header descriptions
ID_REF gene specific probe set
VALUE the abundance of a transcript measured as model-based expression index by PM-only model using dChip (version 1.3) program
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
SE standard error

Data table
ID_REF VALUE ABS_CALL SE
AFFX-MurIL2_at 55.1813 A 2.13074
AFFX-MurIL10_at 106.815 A 4.06966
AFFX-MurIL4_at 63.6259 A 2.21192
AFFX-MurFAS_at 19.8007 A 3.19515
AFFX-BioB-5_at 667.026 P 26.0278
AFFX-BioB-M_at 1721.82 P 51.2171
AFFX-BioB-3_at 1105.42 P 14.6635
AFFX-BioC-5_at 2938.59 P 77.9642
AFFX-BioC-3_at 2750.06 P 144.764
AFFX-BioDn-5_at 4671.62 P 83.1086
AFFX-BioDn-3_at 13237.2 P 534.435
AFFX-CreX-5_at 19801.6 P 560.851
AFFX-CreX-3_at 23775.7 P 609.368
AFFX-DapX-5_at 44.8389 A 2.53955
AFFX-DapX-M_at 80.2996 A 4.44438
AFFX-DapX-3_at 72.4675 A 2.17629
AFFX-LysX-5_at 28.8139 A 1.85757
AFFX-LysX-M_at 82.594 A 4.01596
AFFX-LysX-3_at 71.1257 A 3.70416
AFFX-PheX-5_at 42.2071 A 2.86777

Total number of rows: 14010

Table truncated, full table size 381 Kbytes.




Supplementary data files not provided

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