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Sample GSM305607 Query DataSets for GSM305607
Status Public on Jul 14, 2009
Title Helicobacter hepaticus_wt versus fliA exp. 2 rep. 2
Sample type RNA
 
Channel 1
Source name Helicobacter hepaticus wild type bacteria
Organism Helicobacter hepaticus
Characteristics grown in liquid culture
Extracted molecule total RNA
Extraction protocol Qiagen RNAeasy
Label Cy3
Label protocol custom
 
Channel 2
Source name Helicobacter hepaticus fliA mutant
Organism Helicobacter hepaticus
Characteristics grown in liquid culture
Extracted molecule total RNA
Extraction protocol Qiagen RNAeasy
Label Cy5
Label protocol custom
 
 
Hybridization protocol according to manufacturer's recommendations
Scan protocol scanned with Affymetrix 428 scanner
Description Comparison of wild type to fliA mutant bacteria
Data processing data processing was done with IMAGENE and MAVI (MWG Biotech)
 
Submission date Jul 15, 2008
Last update date Aug 11, 2008
Contact name Christine Josenhans
E-mail(s) [email protected]
Phone +495115324348
Organization name Hannover Medical School
Department Institute for Medical Microbiology
Street address Carl-Neuberg-Strasse 1
City Hannover
ZIP/Postal code 30625
Country Germany
 
Platform ID GPL7051
Series (1)
GSE12123 fliA regulon of Helicobacter hepaticus

Data table header descriptions
ID_REF
nIc3 normalized processed value of cy3 channel
Ic3 processed value of cy3 channel
Ic5 processed value of cy5 channel
VALUE normalized log2 ratios wt/fliA mutant
logvalue log2 ratio of wt versus fliA mutant
flag flag (1=quality flag, 2=manuel flag)

Data table
ID_REF nIc3 Ic3 Ic5 VALUE logvalue flag
4.1.2.9 443 299 217 0.491 -1.026 2
3.1.2.9 1207 816 951 0.788 -0.344 0
2.1.2.9 1494 1010 1592 1.066 0.092 0
4.4.9.9 1628 1100 502 0.308 -1.698 0
1.1.2.9 2124 1436 4004 1.885 0.914 0
4.1.2.5 803 543 722 0.899 -0.154 2
3.1.2.5 681 460 264 0.388 -1.367 2
2.1.9.6 1072 725 560 0.522 -0.939 2
2.1.2.5 2408 1627 3971 1.649 0.722 0
1.1.2.5 4523 3056 6638 1.468 0.553 0
4.1.2.1 1532 1035 2036 1.329 0.41 0
3.1.2.1 7447 5032 13291 1.785 0.836 0
2.1.2.1 1213 820 891 0.734 -0.446 0
1.1.2.1 4765 3220 8395 1.762 0.817 0
4.1.1.9 1123 759 1071 0.954 -0.068 0
3.1.1.9 1183 799 422 0.357 -1.486 0
2.1.1.9 2163 1462 2581 1.193 0.255 0
1.1.1.9 541 365 271 0.501 -0.997 2
4.1.1.5 677 457 734 1.084 0.116 2
3.1.1.5 709 479 113 0.159 -2.655 2

Total number of rows: 1863

Table truncated, full table size 67 Kbytes.




Supplementary file Size Download File type/resource
GSM305607_HH39_wt-fliA2b.txt.gz 326.8 Kb (ftp)(http) TXT
Processed data included within Sample table

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