NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM305605 Query DataSets for GSM305605
Status Public on Jul 14, 2009
Title Helicobacter hepaticus_wt versus fliA exp. 1 rep. 2
Sample type RNA
 
Channel 1
Source name Helicobacter hepaticus fliA mutant
Organism Helicobacter hepaticus
Characteristics grown in liquid culture
Extracted molecule total RNA
Extraction protocol Qiagen RNAeasy
Label Cy3
Label protocol custom
 
Channel 2
Source name Helicobacter hepaticus wt bacteria
Organism Helicobacter hepaticus
Characteristics grown in liquid culture
Extracted molecule total RNA
Extraction protocol Qiagen RNAeasy
Label Cy5
Label protocol custom
 
 
Hybridization protocol according to manufacturer's recommendations
Scan protocol scanned with Affymetrix 428 scanner
Description Comparison of wild type to fliA mutant bacteria
Data processing data processing was done with IMAGENE and MAVI (MWG Biotech)
 
Submission date Jul 15, 2008
Last update date Aug 11, 2008
Contact name Christine Josenhans
E-mail(s) [email protected]
Phone +495115324348
Organization name Hannover Medical School
Department Institute for Medical Microbiology
Street address Carl-Neuberg-Strasse 1
City Hannover
ZIP/Postal code 30625
Country Germany
 
Platform ID GPL7051
Series (1)
GSE12123 fliA regulon of Helicobacter hepaticus

Data table header descriptions
ID_REF
nIc3 normalized processed value of cy3 channel
Ic3 processed value of cy3 channel
Ic5 processed value of cy5 channel
VALUE normalized log2 ratios wt/fliA mutant
logvalue log2 ratio of wt versus fliA mutant
flag flag (1=quality flag, 2=manuel flag)

Data table
ID_REF nIc3 Ic3 Ic5 VALUE logvalue flag
4.1.2.9 39 71 35 0.905 -0.144 0
3.1.2.9 79 145 54 0.685 -0.547 0
2.1.2.9 65 119 56 0.864 -0.212 0
4.4.9.9 66 121 47 0.708 -0.498 0
1.1.2.9 136 251 196 1.444 0.53 0
4.1.2.5 151 278 129 0.857 -0.222 0
3.1.2.5 65 120 53 0.816 -0.294 0
2.1.9.6 59 109 47 0.801 -0.32 0
2.1.2.5 186 342 229 1.233 0.302 0
1.1.2.5 186 342 366 1.966 0.976 0
4.1.2.1 753 1386 992 1.319 0.399 0
3.1.2.1 1276 2349 1504 1.179 0.238 0
2.1.2.1 75 137 73 0.983 -0.024 0
1.1.2.1 163 300 301 1.851 0.889 0
4.1.1.9 66 122 64 0.967 -0.049 0
3.1.1.9 76 139 68 0.893 -0.164 0
2.1.1.9 53 98 43 0.812 -0.301 0
1.1.1.9 37 68 25 0.68 -0.556 0
4.1.1.5 76 141 64 0.838 -0.254 0
3.1.1.5 59 109 41 0.698 -0.52 0

Total number of rows: 1863

Table truncated, full table size 61 Kbytes.




Supplementary file Size Download File type/resource
GSM305605_HH24_wt-fliA1b.txt.gz 244.1 Kb (ftp)(http) TXT
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap