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GEO accession:
Sample GSM305436
Query DataSets for GSM305436
Status
Public on Aug 13, 2008
Title
Uninfected D4_UT
Sample type
RNA
Source name
peripheral blood monocytes
Organism
Homo sapiens
Characteristics
healthy adult
Treatment protocol
100 MOI of F. novicida or Schu S4 for 24 hours
Growth protocol
RPMI-1640 with 10% FBS
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
biotin
Label protocol
Affymetrix standard
Hybridization protocol
Affymetrix standard
Scan protocol
Affymetrix standard
Description
none
Data processing
R 2.7.1 and BioConductor 2.2. gcrma package used to normalize and calculate expression values
Submission date
Jul 14, 2008
Last update date
Aug 28, 2018
Contact name
Jonathan P Butchar
E-mail(s)
[email protected]
Organization name
The Ohio State University
Department
Internal Medicine
Lab
Tridandapani
Street address
400 W. 12th Avenue
City
Columbus
State/province
OH
ZIP/Postal code
43210
Country
USA
Platform ID
GPL570
Series (1)
GSE12108
Microarray analysis of human monocytes infected with Francisella tularensis
Relations
Reanalyzed by
GSE49910
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
VALUE
log2 expression value, calculated by gcrma
Data table
ID_REF
VALUE
1007_s_at
4.71373388175331
1053_at
4.9641405991795
117_at
10.4635545528216
121_at
6.29611379278468
1255_g_at
2.32824893677822
1294_at
6.10532781201303
1316_at
2.47564916417947
1320_at
2.32824893677822
1405_i_at
9.93546729854567
1431_at
2.32824893677822
1438_at
2.6626344245196
1487_at
4.86072718493325
1494_f_at
2.46697216890088
1552256_a_at
5.30968375787884
1552257_a_at
5.77333367126656
1552258_at
2.54089790982417
1552261_at
2.39633258506749
1552263_at
8.67297813575209
1552264_a_at
9.65710042729507
1552266_at
2.32824893677822
Total number of rows:
54675
Table truncated, full table size
1480 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM305436.CEL.gz
4.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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