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Sample GSM304493 Query DataSets for GSM304493
Status Public on Aug 30, 2008
Title K562 cells CREB Knock-out replicate 7
Sample type RNA
 
Source name K562 cells CREB Knock-out
Organism Homo sapiens
Characteristics K562 (Iscoves + 10% FCS) and TF-1 (RPMI + 10%FCS + rhGM-CSF. Cells were cultured at 37oC, 5% CO2 and split every 3 to 4 days. The CREB specific shRNA sequences were selected and validated based on accepted parameters established by Tuschl et al.
Extracted molecule total RNA
Extraction protocol RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
Label biotin
Label protocol RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
 
Hybridization protocol RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
Scan protocol RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
Description none
Data processing MAS5.0
 
Submission date Jul 09, 2008
Last update date Aug 28, 2018
Contact name matteo pellegrini
E-mail(s) [email protected]
Phone 310 825-0012
Organization name UCLA
Street address 610 charles young drive east
City los angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL570
Series (1)
GSE12056 Expression Profile of CREB knockdown in Myeloid Leukemia Cells
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE Intensity
ABS_CALL present or absent
DETECTION P-VALUE P value for ABS_CALL

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2169.7 P 0.000754
AFFX-BioB-M_at 2610.3 P 0.000044
AFFX-BioB-3_at 1830.4 P 0.000662
AFFX-BioC-5_at 5217.6 P 0.000052
AFFX-BioC-3_at 8227.7 P 0.000044
AFFX-BioDn-5_at 13166.9 P 0.000044
AFFX-BioDn-3_at 32563.8 P 0.000081
AFFX-CreX-5_at 83895.3 P 0.000052
AFFX-CreX-3_at 110779.4 P 0.000044
AFFX-DapX-5_at 220.1 A 0.239063
AFFX-DapX-M_at 210.6 A 0.131361
AFFX-DapX-3_at 34.4 A 0.843268
AFFX-LysX-5_at 97.1 A 0.470241
AFFX-LysX-M_at 33.6 A 0.737173
AFFX-LysX-3_at 172.7 A 0.139482
AFFX-PheX-5_at 17.7 A 0.957038
AFFX-PheX-M_at 9.8 A 0.921998
AFFX-PheX-3_at 55.0 A 0.843268
AFFX-ThrX-5_at 19.2 A 0.932322
AFFX-ThrX-M_at 53.1 A 0.631562

Total number of rows: 54674

Table truncated, full table size 1494 Kbytes.




Supplementary file Size Download File type/resource
GSM304493_77478-77458.CEL.gz 5.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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