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Sample GSM303531 Query DataSets for GSM303531
Status Public on Sep 02, 2008
Title Normal, synovial membrane patient J7 (U133A)
Sample type RNA
 
Source name synovial membrane patient J7 (normal control)
Organism Homo sapiens
Characteristics sex: m
age: 39
normal control
Biomaterial provider Clinic for Orthopedics, Eisenberg, Germany
Treatment protocol none
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier´s instructions, Affymetrix
 
Hybridization protocol according to supplier´s instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
 
Submission date Jul 04, 2008
Last update date Sep 02, 2008
Contact name René Huber
E-mail(s) [email protected]
Phone +49 511 5322529
Fax +49 511 5328614
Organization name Hannover Medical School
Department Institute for Clinical Chemistry
Lab Research
Street address Carl-Neuberg-Str. 1
City Hannover
State/province Lower Saxony
ZIP/Postal code 30625
Country Germany
 
Platform ID GPL96
Series (1)
GSE12021 Identification of inter-individual and gene-specific variances in mRNA expression profiles in the RA SM

Data table header descriptions
ID_REF
VALUE signal intensity
ABS_CALL presence/absence call
DETECTION P-VALUE significance of 0-hypothesis

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 329.192 P 0.000753643
AFFX-BioB-M_at 692.667 P 0.000195116
AFFX-BioB-3_at 391.677 P 0.00179591
AFFX-BioC-5_at 1596.3 P 4.42873e-05
AFFX-BioC-3_at 1186.45 P 5.16732e-05
AFFX-BioDn-5_at 879.074 P 0.000146581
AFFX-BioDn-3_at 4334.19 P 0.00010954
AFFX-CreX-5_at 8102.2 P 4.42873e-05
AFFX-CreX-3_at 13636.3 P 4.42873e-05
AFFX-DapX-5_at 14.8057 A 0.659339
AFFX-DapX-M_at 25.1182 A 0.686277
AFFX-DapX-3_at 3.84281 A 0.997977
AFFX-LysX-5_at 23.8225 A 0.116113
AFFX-LysX-M_at 23.9347 A 0.574038
AFFX-LysX-3_at 18.5177 A 0.327079
AFFX-PheX-5_at 3.58765 A 0.932322
AFFX-PheX-M_at 4.29522 A 0.941556
AFFX-PheX-3_at 33.0016 A 0.60308
AFFX-ThrX-5_at 7.04116 A 0.724854
AFFX-ThrX-M_at 3.8556 A 0.916408

Total number of rows: 22283

Table truncated, full table size 673 Kbytes.




Supplementary file Size Download File type/resource
GSM303531_J_7.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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