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Sample GSM303530 Query DataSets for GSM303530
Status Public on Sep 02, 2008
Title Normal, synovial membrane patient J6 (U133B)
Sample type RNA
 
Source name synovial membrane patient J6 (normal control)
Organism Homo sapiens
Characteristics sex: m
age: 17
normal control
Biomaterial provider Clinic for Orthopedics, Eisenberg, Germany
Treatment protocol none
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier´s instructions, Affymetrix
 
Hybridization protocol according to supplier´s instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
 
Submission date Jul 04, 2008
Last update date Sep 02, 2008
Contact name René Huber
E-mail(s) [email protected]
Phone +49 511 5322529
Fax +49 511 5328614
Organization name Hannover Medical School
Department Institute for Clinical Chemistry
Lab Research
Street address Carl-Neuberg-Str. 1
City Hannover
State/province Lower Saxony
ZIP/Postal code 30625
Country Germany
 
Platform ID GPL97
Series (1)
GSE12021 Identification of inter-individual and gene-specific variances in mRNA expression profiles in the RA SM

Data table header descriptions
ID_REF
VALUE signal intensity
ABS_CALL presence/absence call
DETECTION P-VALUE significance of 0-hypothesis

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 763.415 P 0.000753643
AFFX-BioB-M_at 1434.8 P 0.000340305
AFFX-BioB-3_at 768.11 P 0.0044838
AFFX-BioC-5_at 2937.34 P 4.42873e-05
AFFX-BioC-3_at 2893.68 P 5.16732e-05
AFFX-BioDn-5_at 1872.41 P 0.000389797
AFFX-BioDn-3_at 9177.25 P 0.000224668
AFFX-CreX-5_at 20966 P 4.42873e-05
AFFX-CreX-3_at 33359.5 P 4.42873e-05
AFFX-DapX-5_at 89.0262 A 0.195266
AFFX-DapX-M_at 14.1867 A 0.824672
AFFX-DapX-3_at 14.9204 A 0.9273
AFFX-LysX-5_at 31.0056 A 0.749204
AFFX-LysX-M_at 61.706 A 0.686277
AFFX-LysX-3_at 57.357 A 0.175328
AFFX-PheX-5_at 11.7669 A 0.921998
AFFX-PheX-M_at 9.73387 A 0.978098
AFFX-PheX-3_at 69.0391 A 0.382599
AFFX-ThrX-5_at 20.5469 A 0.804734
AFFX-ThrX-M_at 66.8013 A 0.737173

Total number of rows: 22645

Table truncated, full table size 661 Kbytes.




Supplementary file Size Download File type/resource
GSM303530_J_6_B.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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