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Sample GSM303525 Query DataSets for GSM303525
Status Public on Sep 02, 2008
Title Normal, synovial membrane patient J6 (U133A)
Sample type RNA
 
Source name synovial membrane patient J6 (normal control)
Organism Homo sapiens
Characteristics sex: m
age :17
normal control
Biomaterial provider Clinic for Orthopedics, Eisenberg, Germany
Treatment protocol none
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier´s instructions, Affymetrix
 
Hybridization protocol according to supplier´s instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix
 
Submission date Jul 04, 2008
Last update date Sep 02, 2008
Contact name René Huber
E-mail(s) [email protected]
Phone +49 511 5322529
Fax +49 511 5328614
Organization name Hannover Medical School
Department Institute for Clinical Chemistry
Lab Research
Street address Carl-Neuberg-Str. 1
City Hannover
State/province Lower Saxony
ZIP/Postal code 30625
Country Germany
 
Platform ID GPL96
Series (1)
GSE12021 Identification of inter-individual and gene-specific variances in mRNA expression profiles in the RA SM

Data table header descriptions
ID_REF
VALUE signal intensity
ABS_CALL presence/absence call
DETECTION P-VALUE significance of 0-hypothesis ("not expressed")

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 304.969 P 0.00141043
AFFX-BioB-M_at 665.839 P 0.000389797
AFFX-BioB-3_at 423.308 P 0.00227496
AFFX-BioC-5_at 1440.2 P 4.42873e-05
AFFX-BioC-3_at 1090.87 P 4.42873e-05
AFFX-BioDn-5_at 922.618 P 0.000340305
AFFX-BioDn-3_at 4170.15 P 0.000146581
AFFX-CreX-5_at 7689.01 P 4.42873e-05
AFFX-CreX-3_at 12617.3 P 4.42873e-05
AFFX-DapX-5_at 24.054 A 0.425962
AFFX-DapX-M_at 20.3695 A 0.51489
AFFX-DapX-3_at 2.50464 A 0.988616
AFFX-LysX-5_at 32.931 A 0.239063
AFFX-LysX-M_at 6.83472 A 0.876428
AFFX-LysX-3_at 5.42229 A 0.737173
AFFX-PheX-5_at 2.31176 A 0.783476
AFFX-PheX-M_at 1.97242 A 0.984817
AFFX-PheX-3_at 61.501 A 0.340661
AFFX-ThrX-5_at 5.90613 A 0.921998
AFFX-ThrX-M_at 2.96313 A 0.9273

Total number of rows: 22283

Table truncated, full table size 674 Kbytes.




Supplementary file Size Download File type/resource
GSM303525_J_6.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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