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Sample GSM303520 Query DataSets for GSM303520
Status Public on Sep 02, 2008
Title Rheumatoid arthritis, synovial membrane patient EB141 (U133A)
Sample type RNA
 
Source name synovial membrane patient EB141 (rheumatoid arthritis)
Organism Homo sapiens
Characteristics sex: f
age: 73
disease: rheumatoid arthritis
Biomaterial provider Clinic for Orthopedics, Eisenberg, Germany
Treatment protocol NSAID,
prednisolone,
Tilidin
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier´s instructions, Affymetrix
 
Hybridization protocol according to supplier´s instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix
 
Submission date Jul 04, 2008
Last update date Sep 02, 2008
Contact name René Huber
E-mail(s) [email protected]
Phone +49 511 5322529
Fax +49 511 5328614
Organization name Hannover Medical School
Department Institute for Clinical Chemistry
Lab Research
Street address Carl-Neuberg-Str. 1
City Hannover
State/province Lower Saxony
ZIP/Postal code 30625
Country Germany
 
Platform ID GPL96
Series (1)
GSE12021 Identification of inter-individual and gene-specific variances in mRNA expression profiles in the RA SM

Data table header descriptions
ID_REF
VALUE signal intensity
ABS_CALL presence/absence call
DETECTION P-VALUE significance of 0-hypothesis ("not expressed")

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 308.949 P 0.00159257
AFFX-BioB-M_at 615.14 P 0.000224668
AFFX-BioB-3_at 393.236 P 0.00179591
AFFX-BioC-5_at 1646.54 P 4.42873e-05
AFFX-BioC-3_at 996.827 P 4.42873e-05
AFFX-BioDn-5_at 808.021 P 0.000296708
AFFX-BioDn-3_at 3975.13 P 0.000195116
AFFX-CreX-5_at 7917.19 P 4.42873e-05
AFFX-CreX-3_at 11909.6 P 4.42873e-05
AFFX-DapX-5_at 10.5421 A 0.544587
AFFX-DapX-M_at 45.5984 A 0.327079
AFFX-DapX-3_at 4.17151 A 0.987453
AFFX-LysX-5_at 2.59058 A 0.852061
AFFX-LysX-M_at 42.9682 A 0.51489
AFFX-LysX-3_at 29.1482 A 0.327079
AFFX-PheX-5_at 3.2274 A 0.969024
AFFX-PheX-M_at 4.62233 A 0.941556
AFFX-PheX-3_at 38.1732 A 0.313723
AFFX-ThrX-5_at 8.00411 A 0.760937
AFFX-ThrX-M_at 22.8729 A 0.60308

Total number of rows: 22283

Table truncated, full table size 673 Kbytes.




Supplementary file Size Download File type/resource
GSM303520_EB_141.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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