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Sample GSM303377 Query DataSets for GSM303377
Status Public on Sep 02, 2008
Title Osteoarthritis, synovial membrane patient EB140 (U133B)
Sample type RNA
 
Source name synovial membrane patient EB149 (osteoarthritis)
Organism Homo sapiens
Characteristics sex: f
age: 66
disease: osteoarthritis
Biomaterial provider Clinic for Orthopedics, Eisenberg, Germany
Treatment protocol NSAID
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier´s instructions, Affymetrix
 
Hybridization protocol according to supplier´s instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
 
Submission date Jul 03, 2008
Last update date Sep 02, 2008
Contact name René Huber
E-mail(s) [email protected]
Phone +49 511 5322529
Fax +49 511 5328614
Organization name Hannover Medical School
Department Institute for Clinical Chemistry
Lab Research
Street address Carl-Neuberg-Str. 1
City Hannover
State/province Lower Saxony
ZIP/Postal code 30625
Country Germany
 
Platform ID GPL97
Series (1)
GSE12021 Identification of inter-individual and gene-specific variances in mRNA expression profiles in the RA SM

Data table header descriptions
ID_REF
VALUE signal intensity
ABS_CALL presence/absence call
DETECTION P-VALUE significance of 0-hypothesis ("not expressed")

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 644.02 P 0.00401721
AFFX-BioB-M_at 1006.05 P 0.000509415
AFFX-BioB-3_at 610.531 P 0.0166701
AFFX-BioC-5_at 2799.54 P 4.42873e-05
AFFX-BioC-3_at 2407.46 P 4.42873e-05
AFFX-BioDn-5_at 1527.65 P 0.000662269
AFFX-BioDn-3_at 8553.78 P 0.000445901
AFFX-CreX-5_at 18923.3 P 4.42873e-05
AFFX-CreX-3_at 28919.1 P 4.42873e-05
AFFX-DapX-5_at 107.316 A 0.250796
AFFX-DapX-M_at 78.4144 A 0.39692
AFFX-DapX-3_at 20.7067 A 0.891021
AFFX-LysX-5_at 56.4509 A 0.455413
AFFX-LysX-M_at 109.102 A 0.340661
AFFX-LysX-3_at 89.4601 A 0.205732
AFFX-PheX-5_at 10.0087 A 0.9273
AFFX-PheX-M_at 19.1335 A 0.834139
AFFX-PheX-3_at 85.8616 A 0.60308
AFFX-ThrX-5_at 25.0894 A 0.783476
AFFX-ThrX-M_at 78.6133 A 0.340661

Total number of rows: 22645

Table truncated, full table size 659 Kbytes.




Supplementary file Size Download File type/resource
GSM303377_EB_140_B.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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