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Sample GSM303363 Query DataSets for GSM303363
Status Public on Sep 02, 2008
Title Osteoarthritis, synovial membrane patient EB104 (U133B)
Sample type RNA
 
Source name synovial membrane patient EB104 (osteoarthritis)
Organism Homo sapiens
Characteristics sex: f
age: 80
disease: osteoarthritis
Biomaterial provider Clinic for Orthopedics, Eisenberg, Germany
Treatment protocol NSARD
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier´s instructions, Affymetrix
 
Hybridization protocol according to supplier´s instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
 
Submission date Jul 03, 2008
Last update date Sep 02, 2008
Contact name René Huber
E-mail(s) [email protected]
Phone +49 511 5322529
Fax +49 511 5328614
Organization name Hannover Medical School
Department Institute for Clinical Chemistry
Lab Research
Street address Carl-Neuberg-Str. 1
City Hannover
State/province Lower Saxony
ZIP/Postal code 30625
Country Germany
 
Platform ID GPL97
Series (1)
GSE12021 Identification of inter-individual and gene-specific variances in mRNA expression profiles in the RA SM

Data table header descriptions
ID_REF
VALUE signal intensity
ABS_CALL presence/absence call
DETECTION P-VALUE significance of 0-hypothesis ("not expressed")

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 641.087 P 0.00141043
AFFX-BioB-M_at 940.501 P 0.000662269
AFFX-BioB-3_at 640.094 P 0.00359458
AFFX-BioC-5_at 2368.8 P 4.42873e-05
AFFX-BioC-3_at 2130.78 P 4.42873e-05
AFFX-BioDn-5_at 2319.51 P 7.00668e-05
AFFX-BioDn-3_at 10817.7 P 0.000258358
AFFX-CreX-5_at 8902.37 P 4.42873e-05
AFFX-CreX-3_at 17685.6 P 4.42873e-05
AFFX-DapX-5_at 71.6089 A 0.205732
AFFX-DapX-M_at 89.2497 A 0.239063
AFFX-DapX-3_at 19.1989 A 0.824672
AFFX-LysX-5_at 44.8164 A 0.645547
AFFX-LysX-M_at 31.3583 A 0.724854
AFFX-LysX-3_at 50.4106 A 0.382599
AFFX-PheX-5_at 5.37293 A 0.916408
AFFX-PheX-M_at 10.6531 A 0.891021
AFFX-PheX-3_at 135.54 A 0.39692
AFFX-ThrX-5_at 39.0434 A 0.645547
AFFX-ThrX-M_at 11.8996 A 0.749204

Total number of rows: 22645

Table truncated, full table size 659 Kbytes.




Supplementary file Size Download File type/resource
GSM303363_EB_104_B.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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