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GEO accession:
Sample GSM3032967
Query DataSets for GSM3032967
Status
Public on Aug 18, 2020
Title
MDA_R20C_2
Sample type
genomic
Source name
taxol-resistant TNBC cells, Paclitaxel 20nM
Organism
Homo sapiens
Characteristics
cell line: MDA-MB-436
cell type: Triple-negative breast cancer (TNBC)
Extracted molecule
genomic DNA
Extraction protocol
nor provided
Label
Cy5 and Cy3
Label protocol
Standard Illumina Protocol
Hybridization protocol
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human MethylationEPIC Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using standard recommended Illumina scanner settings
Data processing
R package ChAMP v2.9.9
Submission date
Mar 07, 2018
Last update date
Aug 18, 2020
Contact name
Paul Guilhamon
Organization name
SickKids
Street address
686 Bay Street
City
Toronto
State/province
ON
ZIP/Postal code
M5G0A4
Country
Canada
Platform ID
GPL21145
Series (2)
GSE111541
Metabolic adaptations underlie epigenetic vulnerabilities in chemoresistant breast cancer [Methylation profiling]
GSE113687
Metabolic adaptations underlie epigenetic vulnerabilities in chemoresistant breast cancer
Data table header descriptions
ID_REF
VALUE
Average Beta, normalized using ChAMP default settings
Data table
ID_REF
VALUE
cg18478105
0.0320508039230529
cg09835024
0.0171225712657964
cg14361672
0.914023276497736
cg01763666
0.928795313519285
cg02115394
0.0531293729048546
cg25813447
0.00484439349289313
cg07779434
0.040892353820753
cg26724186
0.91290736849156
cg24133276
0.040552263124986
cg00617867
0.970407452587824
cg13773083
0.738948767937715
cg19607165
0.783260814859185
cg11073926
0.0617974739229352
cg08770523
0.0129718172901863
cg24040570
0.0180713432373601
cg24652288
0.77537098514417
cg15998406
0.87549786799349
cg11890956
0.0203383795249231
cg09387925
0.0114149784804451
cg01675618
0.037322140065098
Total number of rows:
793990
Table truncated, full table size
22588 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM3032967_200989060072_R05C01_Grn.idat.gz
7.1 Mb
(ftp)
(http)
IDAT
GSM3032967_200989060072_R05C01_Red.idat.gz
7.0 Mb
(ftp)
(http)
IDAT
Processed data included within Sample table
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