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GEO accession:
Sample GSM3032964
Query DataSets for GSM3032964
Status
Public on Aug 18, 2020
Title
MDA_R20B_4
Sample type
genomic
Source name
taxol-resistant TNBC cells, Paclitaxel 20nM
Organism
Homo sapiens
Characteristics
cell line: MDA-MB-436
cell type: Triple-negative breast cancer (TNBC)
Extracted molecule
genomic DNA
Extraction protocol
nor provided
Label
Cy5 and Cy3
Label protocol
Standard Illumina Protocol
Hybridization protocol
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human MethylationEPIC Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using standard recommended Illumina scanner settings
Data processing
R package ChAMP v2.9.9
Submission date
Mar 07, 2018
Last update date
Aug 18, 2020
Contact name
Paul Guilhamon
Organization name
SickKids
Street address
686 Bay Street
City
Toronto
State/province
ON
ZIP/Postal code
M5G0A4
Country
Canada
Platform ID
GPL21145
Series (2)
GSE111541
Metabolic adaptations underlie epigenetic vulnerabilities in chemoresistant breast cancer [Methylation profiling]
GSE113687
Metabolic adaptations underlie epigenetic vulnerabilities in chemoresistant breast cancer
Data table header descriptions
ID_REF
VALUE
Average Beta, normalized using ChAMP default settings
Data table
ID_REF
VALUE
cg18478105
0.029702056987423
cg09835024
0.0289963277432057
cg14361672
0.925289515287565
cg01763666
0.881738751681717
cg02115394
0.0684809809968838
cg25813447
0.0171286802566542
cg07779434
0.0440702480469051
cg26724186
0.928594599119889
cg24133276
0.0520440426884772
cg00617867
0.962707550502811
cg13773083
0.841037311190054
cg19607165
0.810176591250101
cg11073926
0.0586331209686825
cg08770523
0.0177068538644345
cg24040570
0.0209529860082825
cg24652288
0.724357526189776
cg15998406
0.878712772060341
cg11890956
0.0212764401627748
cg09387925
0.0164425289274504
cg01675618
0.0347738369126478
Total number of rows:
793990
Table truncated, full table size
22584 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM3032964_200989060072_R03C01_Grn.idat.gz
7.1 Mb
(ftp)
(http)
IDAT
GSM3032964_200989060072_R03C01_Red.idat.gz
7.0 Mb
(ftp)
(http)
IDAT
Processed data included within Sample table
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