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GEO accession:
Sample GSM3032960
Query DataSets for GSM3032960
Status
Public on Aug 18, 2020
Title
MDA_R20A_5
Sample type
genomic
Source name
taxol-resistant TNBC cells, Paclitaxel 20nM
Organism
Homo sapiens
Characteristics
cell line: MDA-MB-436
cell type: Triple-negative breast cancer (TNBC)
Extracted molecule
genomic DNA
Extraction protocol
nor provided
Label
Cy5 and Cy3
Label protocol
Standard Illumina Protocol
Hybridization protocol
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human MethylationEPIC Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using standard recommended Illumina scanner settings
Data processing
R package ChAMP v2.9.9
Submission date
Mar 07, 2018
Last update date
Aug 18, 2020
Contact name
Paul Guilhamon
Organization name
SickKids
Street address
686 Bay Street
City
Toronto
State/province
ON
ZIP/Postal code
M5G0A4
Country
Canada
Platform ID
GPL21145
Series (2)
GSE111541
Metabolic adaptations underlie epigenetic vulnerabilities in chemoresistant breast cancer [Methylation profiling]
GSE113687
Metabolic adaptations underlie epigenetic vulnerabilities in chemoresistant breast cancer
Data table header descriptions
ID_REF
VALUE
Average Beta, normalized using ChAMP default settings
Data table
ID_REF
VALUE
cg18478105
0.018663108224549
cg09835024
0.0161664521156137
cg14361672
0.931777857054773
cg01763666
0.929103085703785
cg02115394
0.030429434684653
cg25813447
0.0140939845828404
cg07779434
0.0274455551459995
cg26724186
0.963182580346653
cg24133276
0.0311820500976181
cg00617867
0.967682281784673
cg13773083
0.852918689692314
cg19607165
0.842579657888966
cg11073926
0.0394752746270926
cg08770523
0.0176286570291567
cg24040570
0.0145547870280959
cg24652288
0.749344055053745
cg15998406
0.942122666157694
cg11890956
0.0195959947801877
cg09387925
0.0145057503254845
cg01675618
0.0179415718845982
Total number of rows:
793990
Table truncated, full table size
22601 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM3032960_200989060070_R08C01_Grn.idat.gz
7.1 Mb
(ftp)
(http)
IDAT
GSM3032960_200989060070_R08C01_Red.idat.gz
7.0 Mb
(ftp)
(http)
IDAT
Processed data included within Sample table
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