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GEO accession:
Sample GSM3032958
Query DataSets for GSM3032958
Status
Public on Aug 18, 2020
Title
MDA_R20A_3
Sample type
genomic
Source name
taxol-resistant TNBC cells, Paclitaxel 20nM
Organism
Homo sapiens
Characteristics
cell line: MDA-MB-436
cell type: Triple-negative breast cancer (TNBC)
Extracted molecule
genomic DNA
Extraction protocol
nor provided
Label
Cy5 and Cy3
Label protocol
Standard Illumina Protocol
Hybridization protocol
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human MethylationEPIC Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using standard recommended Illumina scanner settings
Data processing
R package ChAMP v2.9.9
Submission date
Mar 07, 2018
Last update date
Aug 18, 2020
Contact name
Paul Guilhamon
Organization name
SickKids
Street address
686 Bay Street
City
Toronto
State/province
ON
ZIP/Postal code
M5G0A4
Country
Canada
Platform ID
GPL21145
Series (2)
GSE111541
Metabolic adaptations underlie epigenetic vulnerabilities in chemoresistant breast cancer [Methylation profiling]
GSE113687
Metabolic adaptations underlie epigenetic vulnerabilities in chemoresistant breast cancer
Data table header descriptions
ID_REF
VALUE
Average Beta, normalized using ChAMP default settings
Data table
ID_REF
VALUE
cg18478105
0.0281335034161841
cg09835024
0.0424665985248292
cg14361672
0.907304747884462
cg01763666
0.911623041925645
cg02115394
0.0654112222075849
cg25813447
0.00188209985860017
cg07779434
0.0293089326349047
cg26724186
0.935591799207918
cg24133276
0.0476426580751258
cg00617867
0.963161052367451
cg13773083
0.7059418729985
cg19607165
0.803440741031455
cg11073926
0.0649017604394478
cg08770523
0.0128094231833049
cg24040570
0.024855034604116
cg24652288
0.779397491918451
cg15998406
0.849974038221796
cg11890956
0.0103339270374351
cg09387925
0.0153936953066335
cg01675618
0.0332051967454121
Total number of rows:
793990
Table truncated, full table size
22584 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM3032958_200989060070_R06C01_Grn.idat.gz
7.1 Mb
(ftp)
(http)
IDAT
GSM3032958_200989060070_R06C01_Red.idat.gz
7.0 Mb
(ftp)
(http)
IDAT
Processed data included within Sample table
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