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GEO accession:
Sample GSM3032956
Query DataSets for GSM3032956
Status
Public on Aug 18, 2020
Title
MDA_R20A_1
Sample type
genomic
Source name
taxol-resistant TNBC cells, Paclitaxel 20nM
Organism
Homo sapiens
Characteristics
cell line: MDA-MB-436
cell type: Triple-negative breast cancer (TNBC)
Extracted molecule
genomic DNA
Extraction protocol
nor provided
Label
Cy5 and Cy3
Label protocol
Standard Illumina Protocol
Hybridization protocol
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human MethylationEPIC Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using standard recommended Illumina scanner settings
Data processing
R package ChAMP v2.9.9
Submission date
Mar 07, 2018
Last update date
Aug 18, 2020
Contact name
Paul Guilhamon
Organization name
SickKids
Street address
686 Bay Street
City
Toronto
State/province
ON
ZIP/Postal code
M5G0A4
Country
Canada
Platform ID
GPL21145
Series (2)
GSE111541
Metabolic adaptations underlie epigenetic vulnerabilities in chemoresistant breast cancer [Methylation profiling]
GSE113687
Metabolic adaptations underlie epigenetic vulnerabilities in chemoresistant breast cancer
Data table header descriptions
ID_REF
VALUE
Average Beta, normalized using ChAMP default settings
Data table
ID_REF
VALUE
cg18478105
0.0310487998086587
cg09835024
0.0215513094277968
cg14361672
0.90796262250976
cg01763666
0.92124632282793
cg02115394
0.0527013782244332
cg25813447
0.0142495162339671
cg07779434
0.038584887012452
cg26724186
0.934557554057654
cg24133276
0.0389964739016338
cg00617867
0.971237773019344
cg13773083
0.726196291134345
cg19607165
0.823544838150092
cg11073926
0.0692751582440837
cg08770523
0.0214542493856387
cg24040570
0.0174396976236118
cg24652288
0.727932485943545
cg15998406
0.870421793728867
cg11890956
0.0236855987705005
cg09387925
0.0179041574119454
cg01675618
0.025279559576401
Total number of rows:
793990
Table truncated, full table size
22580 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM3032956_200861170050_R02C01_Grn.idat.gz
7.1 Mb
(ftp)
(http)
IDAT
GSM3032956_200861170050_R02C01_Red.idat.gz
7.0 Mb
(ftp)
(http)
IDAT
Processed data included within Sample table
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