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GEO accession:
Sample GSM3032955
Query DataSets for GSM3032955
Status
Public on Aug 18, 2020
Title
MDA_parental_5
Sample type
genomic
Source name
parental TNBC cells, DMSO
Organism
Homo sapiens
Characteristics
cell line: MDA-MB-436
cell type: Triple-negative breast cancer (TNBC)
Extracted molecule
genomic DNA
Extraction protocol
nor provided
Label
Cy5 and Cy3
Label protocol
Standard Illumina Protocol
Hybridization protocol
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human MethylationEPIC Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using standard recommended Illumina scanner settings
Data processing
R package ChAMP v2.9.9
Submission date
Mar 07, 2018
Last update date
Aug 18, 2020
Contact name
Paul Guilhamon
Organization name
SickKids
Street address
686 Bay Street
City
Toronto
State/province
ON
ZIP/Postal code
M5G0A4
Country
Canada
Platform ID
GPL21145
Series (2)
GSE111541
Metabolic adaptations underlie epigenetic vulnerabilities in chemoresistant breast cancer [Methylation profiling]
GSE113687
Metabolic adaptations underlie epigenetic vulnerabilities in chemoresistant breast cancer
Data table header descriptions
ID_REF
VALUE
Average Beta, normalized using ChAMP default settings
Data table
ID_REF
VALUE
cg18478105
0.0226082342173483
cg09835024
0.0202660032079815
cg14361672
0.719527191734178
cg01763666
0.891231540276711
cg02115394
0.057866481184172
cg25813447
0.00731980695333221
cg07779434
0.0309116322197435
cg26724186
0.93569329340518
cg24133276
0.0400626283963771
cg00617867
0.973474428955105
cg13773083
0.64117127374005
cg19607165
0.691939729579476
cg11073926
0.0651517386422628
cg08770523
0.0327503355820031
cg24040570
0.0253987794893097
cg24652288
0.793116530185678
cg15998406
0.838983434226757
cg11890956
0.02840244212867
cg09387925
0.0131048123082189
cg01675618
0.0401172638152453
Total number of rows:
793990
Table truncated, full table size
22575 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM3032955_200989060070_R04C01_Grn.idat.gz
7.0 Mb
(ftp)
(http)
IDAT
GSM3032955_200989060070_R04C01_Red.idat.gz
7.0 Mb
(ftp)
(http)
IDAT
Processed data included within Sample table
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