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GEO accession:
Sample GSM3032954
Query DataSets for GSM3032954
Status
Public on Aug 18, 2020
Title
MDA_parental_4
Sample type
genomic
Source name
parental TNBC cells, DMSO
Organism
Homo sapiens
Characteristics
cell line: MDA-MB-436
cell type: Triple-negative breast cancer (TNBC)
Extracted molecule
genomic DNA
Extraction protocol
nor provided
Label
Cy5 and Cy3
Label protocol
Standard Illumina Protocol
Hybridization protocol
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human MethylationEPIC Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using standard recommended Illumina scanner settings
Data processing
R package ChAMP v2.9.9
Submission date
Mar 07, 2018
Last update date
Aug 18, 2020
Contact name
Paul Guilhamon
Organization name
SickKids
Street address
686 Bay Street
City
Toronto
State/province
ON
ZIP/Postal code
M5G0A4
Country
Canada
Platform ID
GPL21145
Series (2)
GSE111541
Metabolic adaptations underlie epigenetic vulnerabilities in chemoresistant breast cancer [Methylation profiling]
GSE113687
Metabolic adaptations underlie epigenetic vulnerabilities in chemoresistant breast cancer
Data table header descriptions
ID_REF
VALUE
Average Beta, normalized using ChAMP default settings
Data table
ID_REF
VALUE
cg18478105
0.0332913475195198
cg09835024
0.0226920893160602
cg14361672
0.736663383058035
cg01763666
0.891189792048879
cg02115394
0.0530496607466826
cg25813447
0.0127022478086972
cg07779434
0.0353850038681434
cg26724186
0.912667125334107
cg24133276
0.0385760744773737
cg00617867
0.969453571547913
cg13773083
0.671841484026031
cg19607165
0.72580345625567
cg11073926
0.0699113339713532
cg08770523
0.032173979415804
cg24040570
0.0145567366835328
cg24652288
0.834086670734203
cg15998406
0.839495819995456
cg11890956
0.0194696116949854
cg09387925
0.0221081234003558
cg01675618
0.0383364763410045
Total number of rows:
793990
Table truncated, full table size
22573 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM3032954_200989060070_R03C01_Grn.idat.gz
7.0 Mb
(ftp)
(http)
IDAT
GSM3032954_200989060070_R03C01_Red.idat.gz
7.0 Mb
(ftp)
(http)
IDAT
Processed data included within Sample table
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