NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2998016 Query DataSets for GSM2998016
Status Public on Feb 13, 2018
Title Patient Derived Xenograft LTL-418R
Sample type RNA
 
Source name Prostate Tumor
Organism Homo sapiens
Characteristics tissue: prostate cancer tumor
tumor foci: Patient Derived Xenograft
Extracted molecule total RNA
Extraction protocol RNA were extracted by using the mirVana RNA Isolation Kit (Ambion, Burlington, Canada). The quality and quantity of RNA were assessed with an Agilent 2100 Bioanalyzer (Caliper Technologies Corp., Canada)
Label Cy3
Label protocol 100ng of total RNA was used as input for generation of Cyanine-3-labeled cRNA following Agilent’s One-Color Microarray-Based Gene Expression Analysis Low Input Quick Amp Labeling v6.0.
 
Hybridization protocol 600ng labeled cRNA was hybridized on Agilent SurePrint G3 Human GE 8x60K Microarray (Design ID 028004)
Scan protocol Slides were scanned with the Agilent DNA Microarray Scanner at a 3um scan resolution using the one colour and 20 bit tiff file settings
Data processing Image files were processed with Agilent Feature Extraction 10.10 to produce spatially detrended and background subtracted gProcessedSignal intensities. Data were quantile normalized in GeneSpring 12.0.
 
Submission date Feb 13, 2018
Last update date Feb 13, 2018
Contact name Shawn Anderson
E-mail(s) [email protected]
Organization name Vancouver Prostate Centre
Lab Laboratory for Advanced Genome Analysis
Street address 2660 Oak Street
City Vancouver
State/province BC
ZIP/Postal code V6H3Z6
Country Canada
 
Platform ID GPL14550
Series (2)
GSE41192 High fidelity patient-derived xenografts for accelerating prostate cancer discovery and drug development (expression)
GSE41193 High fidelity patient-derived xenografts for accelerating prostate cancer discovery and drug development

Data table header descriptions
ID_REF
VALUE log2 normalized signal

Data table
ID_REF VALUE
GE_BrightCorner 15.325612
DarkCorner 1.4734904
A_23_P326296 8.584209
A_24_P287941 7.5130744
A_24_P325046 5.7505593
A_23_P200404 11.0729065
A_19_P00800513 11.200241
A_23_P15619 13.770501
A_33_P3402354 5.623073
A_33_P3338798 1.8629127
A_32_P98683 11.458543
A_23_P137543 10.695361
A_19_P00803040 9.867765
A_23_P117852 6.7331114
A_33_P3285585 1.6418902
A_24_P328231 5.5671244
A_33_P3415668 1.6231699
A_23_P73609 3.8007634
A_24_P186124 9.391378
A_23_P369983 10.790858

Total number of rows: 42545

Table truncated, full table size 961 Kbytes.




Supplementary file Size Download File type/resource
GSM2998016_US09503746_252800419275_S01_GE1_1100_Jul11_1_2.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap