NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2948518 Query DataSets for GSM2948518
Status Public on Apr 09, 2019
Title NNBC11
Sample type SRA
 
Source name liver
Organism Anguilla anguilla
Characteristics tissue: liver
location: Gironde Estuary
Extracted molecule total RNA
Extraction protocol PureLink MiRNA Isolation Kit (Invitrogen)
NEBNext Small RNA Library Prep Set for Illumina
 
Library strategy miRNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina HiSeq 4000
 
Description microRNA
FFP305
Data processing Image analysis and base calling were performed using RTA 2.7.3 and bcl2fastq 2.17.1.14.
MiRNA prediction and the assessment of copy number were performed using the miRDeep2 Package
Conserved miRNAs were annotated based on miRBase release 21.
Genome_build: AZBK00000000.1
 
Submission date Jan 26, 2018
Last update date Apr 09, 2019
Contact name Anthony Bertucci
Organization name University of Bordeaux
Street address Place du Dr Peyneau
City Arcachon
ZIP/Postal code 33120
Country France
 
Platform ID GPL24544
Series (1)
GSE109689 MiSSEel - MicroRNA Sequencing in Stressed Eels
Relations
BioSample SAMN08399060
SRA SRX3601896

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap