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| Status |
Public on Apr 09, 2019 |
| Title |
NNBC9 |
| Sample type |
SRA |
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| Source name |
liver
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| Organism |
Anguilla anguilla |
| Characteristics |
tissue: liver
location: Gironde Estuary
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| Extracted molecule |
total RNA |
| Extraction protocol |
PureLink MiRNA Isolation Kit (Invitrogen)
NEBNext Small RNA Library Prep Set for Illumina
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| Library strategy |
miRNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina HiSeq 4000 |
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| Description |
microRNA
FFP303
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| Data processing |
Image analysis and base calling were performed using RTA 2.7.3 and bcl2fastq 2.17.1.14.
MiRNA prediction and the assessment of copy number were performed using the miRDeep2 Package
Conserved miRNAs were annotated based on miRBase release 21.
Genome_build: AZBK00000000.1
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| Submission date |
Jan 26, 2018 |
| Last update date |
Apr 09, 2019 |
| Contact name |
Anthony Bertucci |
| Organization name |
University of Bordeaux
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| Street address |
Place du Dr Peyneau
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| City |
Arcachon |
| ZIP/Postal code |
33120 |
| Country |
France |
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| Platform ID |
GPL24544 |
| Series (1) |
| GSE109689 |
MiSSEel - MicroRNA Sequencing in Stressed Eels |
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| Relations |
| BioSample |
SAMN08399062 |
| SRA |
SRX3601894 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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