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Sample GSM288536 Query DataSets for GSM288536
Status Public on Sep 08, 2008
Title HT29 resistant cells replicate 3
Sample type RNA
 
Source name HT29 methotrexate-resistant cells
Organism Homo sapiens
Characteristics cell line: HT29
cell type: colon cancer
methotrexate sensitivity: resistant
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit from Qiagen
Label biotin
Label protocol Affymetrix protocol for HG U133 plus 2.0
 
Hybridization protocol Affymetrix protocol for HG U133 plus 2.0
Scan protocol Affymetrix protocol for HG U133 plus 2.0
Description Gene expression profile of HT29 cells resistant to Methotrexate.
Data processing Value generated using MAS 5.0 non-scaled
 
Submission date May 14, 2008
Last update date Aug 28, 2018
Contact name Carlos J Ciudad
E-mail(s) [email protected]
Phone +34-93-403-4455
Organization name University of Barcelona
Department Biochemistry and Molecular Biology
Lab School of Pharmacy
Street address Av. Juan XXIII-27
City Barcelona
State/province Barcelona
ZIP/Postal code 08028
Country Spain
 
Platform ID GPL570
Series (2)
GSE11440 Role of Caveolin 1, E-Cadherin, Enolase 2 and PKCa on resistance to methotrexate in human HT29 colon cancer cells
GSE16648 Networking of differentially expressed genes in human cancer cell lines resistant to methotrexate
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE MAS 5.0 signal
ABS_CALL present or absent
Detection p-value detection p-value

Data table
ID_REF VALUE ABS_CALL Detection p-value
AFFX-BioB-5_at 200 P 0.000195
AFFX-BioB-M_at 258.8 P 0.000044
AFFX-BioB-3_at 139.7 P 0.000044
AFFX-BioC-5_at 569.4 P 0.000044
AFFX-BioC-3_at 719.4 P 0.000044
AFFX-BioDn-5_at 1056.2 P 0.000044
AFFX-BioDn-3_at 2604.2 P 0.00006
AFFX-CreX-5_at 6122.7 P 0.000052
AFFX-CreX-3_at 6968.8 P 0.000044
AFFX-DapX-5_at 5.6 A 0.52976
AFFX-DapX-M_at 11.6 A 0.313723
AFFX-DapX-3_at 5.7 A 0.52976
AFFX-LysX-5_at 1.2 A 0.772364
AFFX-LysX-M_at 9.8 A 0.48511
AFFX-LysX-3_at 7.9 A 0.156732
AFFX-PheX-5_at 1.1 A 0.910522
AFFX-PheX-M_at 1.1 A 0.910522
AFFX-PheX-3_at 9.9 A 0.175328
AFFX-ThrX-5_at 4.9 A 0.41138
AFFX-ThrX-M_at 1.1 A 0.783476

Total number of rows: 54675

Table truncated, full table size 1405 Kbytes.




Supplementary file Size Download File type/resource
GSM288536.CEL.gz 8.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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