 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Dec 12, 2017 |
| Title |
Arabidopsis ein3eil1rhd6rsl1 root rep 1 |
| Sample type |
SRA |
| |
|
| Source name |
root
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
genotype/variation: ein3eil1rhd6rsl1
treatment: none
|
| Growth protocol |
Col-0, ein3 eil1, rhd6 rsl1 and ein3 eil1 rhd6 rsl1 were grown vertically on MS medium for 6 d and then treated with or without ET at 10 ppm for 4 h.
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
RNAeasy Kit
stander Illumina mRNA-seq protocol
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
BWA, v0.7.7, default parameter
degeR, v3.20.1, default parameter
Genome_build: TAIR10
Supplementary_files_format_and_content: Gene, Reads per Gene(Total:40890624),Length, Coverage, Rpkm
|
| |
|
| Submission date |
Dec 05, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Bosheng Li |
| E-mail(s) |
[email protected]
|
| Organization name |
SUSTC (current, may different with previous institution )
|
| Department |
MCDB
|
| Street address |
SUStech Huiyuan #1 406
|
| City |
Shenzhen |
| State/province |
Guangdong |
| ZIP/Postal code |
581055 |
| Country |
China |
| |
|
| Platform ID |
GPL13222 |
| Series (1) |
| GSE107699 |
Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis |
|
| Relations |
| BioSample |
SAMN08133273 |
| SRA |
SRX3445264 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM2876174_PR2S_GHW_ee61-air-1_expression.xls.gz |
598.3 Kb |
(ftp)(http) |
XLS |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
|
|
|
|
 |
