|
| Status |
Public on Jan 08, 2018 |
| Title |
Dsim_CidM_5m_IP_(20151207_PT_Ds_ML82_IP_5min) |
| Sample type |
SRA |
| |
|
| Source name |
ML82-19a cells;anti-CidM
|
| Organism |
Drosophila simulans |
| Characteristics |
cell type: ML82-19a cells
antibody: anti-CidM
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Drosophila ChIP_protocol.rtf
PMID 25827087
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
ChIP Drosophila simulans CENP-A IP 5 min
|
| Data processing |
We looked for short specific alpha satellite sequences in the fastq files using grep.
|
| |
|
| Submission date |
Oct 17, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Jorja Henikoff |
| E-mail(s) |
[email protected]
|
| Phone |
206-667-4850
|
| Organization name |
Fred Hutchinson Cancer Research Center
|
| Department |
Basic Sciences
|
| Lab |
Henikoff
|
| Street address |
1100 Fairview AV N, A1-162
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98109-1024 |
| Country |
USA |
| |
|
| Platform ID |
GPL22293 |
| Series (1) |
| GSE105100 |
Simple and Complex Centromeric Satellites in Drosophila Sibling Species |
|
| Relations |
| BioSample |
SAMN07796387 |
| SRA |
SRX3293421 |
