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Sample GSM277466 Query DataSets for GSM277466
Status Public on Dec 22, 2008
Title Synchronous liver metastasis colorectal CA 05
Sample type RNA
 
Source name Synchronous liver metastasis from colorectal cancer_sample S05
Organism Homo sapiens
Characteristics Tissue: liver metastasis; Tumor: colorectal carcinoma. Status: Synchronous metastasis
Biomaterial provider Prof. Guido Biasco. Institute of Hematology and Medical Oncology "L. & A. Seragnoli", Bologna, Italy.
Extracted molecule total RNA
Extraction protocol Trizol reagent on frozen, pulverized tissue specimen
Label biotin
Label protocol Affymetrix one-cycle labeling protocol (Expression_analysis_technical_manual)
 
Hybridization protocol According to Affymetrix Expression_analysis_technical_manual
Scan protocol Affymetrix scanner 7G. GCOS 1.4 acquisition software
Description null
Data processing MAS5.0 Signal and Detection algorithm. Scaling to 500.
 
Submission date Mar 26, 2008
Last update date Aug 28, 2018
Contact name Maria Abbondanza Pantaleo
E-mail(s) [email protected]
Organization name Policlinico S. Orsola-Malpighi, University of Bologna
Department Institute of Hematology and Medical Oncology "L.A.Seragnoli"
Street address via Massarenti 9
City Bologna
State/province BO
ZIP/Postal code 40138
Country Italy
 
Platform ID GPL570
Series (1)
GSE10961 Gene expression profiling of liver metastases from colorectal cancer
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE Signal, scaled to 500
ABS_CALL Detection
DETECTION P-VALUE P value of detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2690.26 P 5.16732e-05
AFFX-BioB-M_at 3404.03 P 4.42873e-05
AFFX-BioB-3_at 2489.21 P 4.42873e-05
AFFX-BioC-5_at 6994.82 P 4.42873e-05
AFFX-BioC-3_at 9399.11 P 4.42873e-05
AFFX-BioDn-5_at 21413.1 P 4.42873e-05
AFFX-BioDn-3_at 30143.5 P 4.42873e-05
AFFX-CreX-5_at 87705.3 P 5.16732e-05
AFFX-CreX-3_at 92791 P 4.42873e-05
AFFX-DapX-5_at 6136.55 P 4.42873e-05
AFFX-DapX-M_at 14924.9 P 5.16732e-05
AFFX-DapX-3_at 24126.4 P 4.42873e-05
AFFX-LysX-5_at 901.234 P 4.42873e-05
AFFX-LysX-M_at 1966.64 P 6.02111e-05
AFFX-LysX-3_at 4122.24 P 4.42873e-05
AFFX-PheX-5_at 1817.06 P 4.42246e-05
AFFX-PheX-M_at 2816.64 P 4.42873e-05
AFFX-PheX-3_at 2726.71 P 4.42873e-05
AFFX-ThrX-5_at 1235.34 P 4.42873e-05
AFFX-ThrX-M_at 3125.49 P 4.42873e-05

Total number of rows: 54675

Table truncated, full table size 1639 Kbytes.




Supplementary file Size Download File type/resource
GSM277466.CEL.gz 7.6 Mb (ftp)(http) CEL
GSM277466.CHP.gz 12.7 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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