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Status
Public on Jan 01, 2005
Title
lec1-1 Root
Sample type
RNA
Source name
Genotype: Ws-0, lec1-1; Organ: Root
Organism
Arabidopsis thaliana Extracted molecule
total RNA
Description
Microarray Methods: Total RNA was extracted using the Hot Borate Method (ref.). Fifteen micrograms of biotinylated complementary RNA (cRNA) was prepared as described (Le et. al., 2004, PNAS). cRNA was subsequently hybridized to Affymetrix ATH1 Arabidopsis GeneChips. The scanned array images were analyzed using Affymetrix Microarray Suite 5.0 (MAS 5.0) with a global scaling intensity set at 500.
Submission date
Jul 24, 2004
Last update date
Aug 28, 2018
Contact name
Bob Goldberg
E-mail(s)
[email protected] Phone
310-825-3270
Organization name
University of California, Los Angeles
Department
Molecular, Cell and Developmental Biology
Street address
610 Charles E Young Drive East
City
Los Angeles
State/province
CA
ZIP/Postal code
90095
Country
USA
Platform ID
GPL198 Series (1)
GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
Relations Reanalyzed by
GSE119083
Data table header descriptions ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected(Present ; P), not detected (Absent; A), or marginally detected (Marginal; M)
DETECTION P-VALUE A p-value indicating the significance of the Detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
171.3
P
0.000662
AFFX-BioB-M_at
292.3
P
0.00006
AFFX-BioB-3_at
165.5
P
0.000195
AFFX-BioC-5_at
519.6
P
0.000127
AFFX-BioC-3_at
282.6
P
0.000052
AFFX-BioDn-5_at
564.4
P
0.000044
AFFX-BioDn-3_at
2113.7
P
0.000052
AFFX-CreX-5_at
5157.3
P
0.000044
AFFX-CreX-3_at
6795.1
P
0.000044
AFFX-DapX-5_at
10.4
A
0.340661
AFFX-DapX-M_at
7
A
0.631562
AFFX-DapX-3_at
3.4
A
0.868639
AFFX-LysX-5_at
2.7
A
0.834139
AFFX-LysX-M_at
3.4
A
0.937071
AFFX-LysX-3_at
20.3
A
0.147939
AFFX-PheX-5_at
2
A
0.945787
AFFX-PheX-M_at
2.5
A
0.834139
AFFX-PheX-3_at
4.9
A
0.868639
AFFX-ThrX-5_at
1.6
A
0.932322
AFFX-ThrX-M_at
15.6
A
0.41138
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