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Status
Public on Jan 01, 2005
Title
WT Root
Sample type
RNA
Source name
Genotype: Ws-0, Wild Type; Organ: Root
Organism
Arabidopsis thaliana
Extracted molecule
total RNA
Description
Microarray Methods: Total RNA was extracted using the Hot Borate Method (ref.). Fifteen micrograms of biotinylated complementary RNA (cRNA) was prepared as described (Le et. al., 2004, PNAS). cRNA was subsequently hybridized to Affymetrix ATH1 Arabidopsis GeneChips. The scanned array images were analyzed using Affymetrix Microarray Suite 5.0 (MAS 5.0) with a global scaling intensity set at 500.
Submission date
Jul 24, 2004
Last update date
Aug 28, 2018
Contact name
Bob Goldberg
E-mail(s)
[email protected]
Phone
310-825-3270
Organization name
University of California, Los Angeles
Department
Molecular, Cell and Developmental Biology
Street address
610 Charles E Young Drive East
City
Los Angeles
State/province
CA
ZIP/Postal code
90095
Country
USA
Platform ID
GPL198
Series (1)
GSE680
Transcript Profiling of Arabidopsis Plant Life Cycle
Relations
Reanalyzed by
GSE119083
Data table header descriptions
ID_REF
VALUE
This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL
A qualitative measurement indicating if the probe set is detected(Present ; P), not detected (Absent; A), or marginally detected (Marginal; M)
DETECTION P-VALUE
A p-value indicating the significance of the Detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
186.8
P
0.000581
AFFX-BioB-M_at
224.5
P
0.00006
AFFX-BioB-3_at
118.1
P
0.000297
AFFX-BioC-5_at
464.1
P
0.000095
AFFX-BioC-3_at
310.2
P
0.000095
AFFX-BioDn-5_at
509.8
P
0.000044
AFFX-BioDn-3_at
2237.3
P
0.000044
AFFX-CreX-5_at
4570.7
P
0.000044
AFFX-CreX-3_at
7178.7
P
0.000044
AFFX-DapX-5_at
9
A
0.354453
AFFX-DapX-M_at
17.1
A
0.51489
AFFX-DapX-3_at
3.8
A
0.891021
AFFX-LysX-5_at
2.5
A
0.904333
AFFX-LysX-M_at
2.3
A
0.988616
AFFX-LysX-3_at
13.1
A
0.51489
AFFX-PheX-5_at
2
A
0.957038
AFFX-PheX-M_at
1.4
A
0.876428
AFFX-PheX-3_at
7.6
A
0.724854
AFFX-ThrX-5_at
10.3
A
0.672921
AFFX-ThrX-M_at
2.5
A
0.712257
Total number of rows: 22810 Table truncated, full table size 588 Kbytes .Supplementary file
Size
Download
File type/resource
GSM27361.CEL.gz
3.3 Mb
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CEL