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Sample GSM265979 Query DataSets for GSM265979
Status Public on Dec 31, 2008
Title Normal prostates (NORP-8)
Sample type RNA
 
Source name normal prostates
Organism Mus musculus
Characteristics ventral and dorsolateral lobes of normal prostates
Extracted molecule total RNA
Extraction protocol Trizol
Label biotin
Label protocol Affymetrix standard protocol.
 
Hybridization protocol As described by Affymetrix. Standard protocol.
Scan protocol Arrays were scanned with the GeneChip Scanner 3000 and GeneChip Operating Software acquired raw fluorescence data.
Description ventral and dorsolateral lobes of normal prostates
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
 
Submission date Feb 14, 2008
Last update date Aug 28, 2018
Contact name BIDMC GENOMICS
E-mail(s) [email protected]
Phone 6176670884
Organization name Beth Israel Deaconess Medical Center
Department Genomics Center
Street address 4 BlackFan Circle
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL1261
Series (1)
GSE10525 Gene expression profile of Transgenic Adenocarcinoma of the Mouse Prostate (TRAMP)
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 871.6391 P 9.4506E-05
AFFX-BioB-M_at 1263.617 P 4.42873E-05
AFFX-BioB-3_at 704.2343 P 4.42873E-05
AFFX-BioC-5_at 2179.351 P 5.16733E-05
AFFX-BioC-3_at 2346.273 P 4.42873E-05
AFFX-BioDn-5_at 5061.027 P 4.42873E-05
AFFX-BioDn-3_at 9940.939 P 6.02111E-05
AFFX-CreX-5_at 28903.04 P 5.16733E-05
AFFX-CreX-3_at 32145.91 P 4.42873E-05
AFFX-DapX-5_at 41.00595 A 0.1161128
AFFX-DapX-M_at 28.93135 A 0.6030893
AFFX-DapX-3_at 7.572847 A 0.9219982
AFFX-LysX-5_at 12.81813 A 0.6315623
AFFX-LysX-M_at 59.38076 A 0.4406464
AFFX-LysX-3_at 54.25077 P 0.01138437
AFFX-PheX-5_at 5.763824 A 0.949771
AFFX-PheX-M_at 3.139684 A 0.9415562
AFFX-PheX-3_at 24.65259 A 0.6593388
AFFX-ThrX-5_at 40.19764 A 0.1851306
AFFX-ThrX-M_at 21.93973 A 0.4554125

Total number of rows: 45101

Table truncated, full table size 1422 Kbytes.




Supplementary file Size Download File type/resource
GSM265979.CEL.gz 3.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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