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Sample GSM265971

Query DataSets for GSM265971

Status

Public on Dec 31, 2008

Title

Transgenic Adenocarcinoma of the Mouse Prostate (TRAMP) tumor (TRAMP-5)

Sample type

RNA

Source name

Transgenic Adenocarcinoma of the Mouse Prostate (TRAMP) tumor

Organism

Mus musculus

Characteristics

TRAMP Tumors

Extracted molecule

total RNA

Extraction protocol

Trizol

Label

biotin

Label protocol

Affymetrix standard protocol.

Hybridization protocol

As described by Affymetrix. Standard protocol.

Scan protocol

Arrays were scanned with the GeneChip Scanner 3000 and GeneChip Operating Software acquired raw fluorescence data.

Description

TRAMP Tumors

Data processing

The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.

Submission date

Feb 14, 2008

Last update date

Aug 28, 2018

Contact name

BIDMC GENOMICS

E-mail(s)

[email protected]

Phone

6176670884

Organization name

Beth Israel Deaconess Medical Center

Department

Genomics Center

Street address

4 BlackFan Circle

City

Boston

State/province

ZIP/Postal code

02115

Country

USA

Platform ID

GPL1261

Series (1)

GSE10525

Gene expression profile of Transgenic Adenocarcinoma of the Mouse Prostate (TRAMP)

Relations

Reanalyzed by

GSE119085

Data table header descriptions
ID_REF
VALUE	MAS5-calculated Signal intensity
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE	'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	1130.11	P	7.00668E-05
AFFX-BioB-M_at	1362.03	P	4.42873E-05
AFFX-BioB-3_at	1099.416	P	4.42873E-05
AFFX-BioC-5_at	3424.241	P	4.42873E-05
AFFX-BioC-3_at	3983.647	P	4.42873E-05
AFFX-BioDn-5_at	7955.8	P	5.16733E-05
AFFX-BioDn-3_at	12067.92	P	5.16733E-05
AFFX-CreX-5_at	45649.32	P	5.16733E-05
AFFX-CreX-3_at	51202.36	P	4.42873E-05
AFFX-DapX-5_at	3687.133	P	4.42873E-05
AFFX-DapX-M_at	8539.877	P	6.02111E-05
AFFX-DapX-3_at	9168.578	P	4.42873E-05
AFFX-LysX-5_at	711.2872	P	5.16733E-05
AFFX-LysX-M_at	1116.458	P	0.000296708
AFFX-LysX-3_at	3086.716	P	9.4506E-05
AFFX-PheX-5_at	1017.77	P	5.16733E-05
AFFX-PheX-M_at	1483.856	P	4.42873E-05
AFFX-PheX-3_at	1464.948	P	4.42873E-05
AFFX-ThrX-5_at	541.1542	P	0.000146581
AFFX-ThrX-M_at	1249.417	P	4.42246E-05

Total number of rows: 45101

Table truncated, full table size 1414 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM265971.CEL.gz	6.1 Mb	(ftp)(http)	CEL
Processed data included within Sample table