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| Status |
Public on May 09, 2017 |
| Title |
male flower-3 |
| Sample type |
SRA |
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| Source name |
male flower
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| Organism |
Vernicia fordii |
| Characteristics |
tissue: flower
Sex: male
developmental stage: stage 7
age: 4-year old
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| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was isolated using RNAiso plus (Takara, Japan). RNA sequencing was performed using Illumina Hiseq 2500
RNA libraries were prepared for sequencing using standard Illumina protocols
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
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| Data processing |
Illumina Casava1.8 software used for basecalling.
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to NCBI/UniProt using blastx
Reads Per Kilobase of exon per Megabase of library size (RPKM) were calculated using DEGseq
Supplementary_files_format_and_content: tab-delimited text files include RPKM values
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| Submission date |
May 08, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Lifang Wu |
| E-mail(s) |
[email protected]
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| Organization name |
Hefei Institutes of Physical Science, Chinese Academy of Sciences
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| Street address |
350 Shushanhu Road, Hefei, Anhui 230031, People's Republic of China
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| City |
Hefei |
| State/province |
Anhui |
| ZIP/Postal code |
230031 |
| Country |
China |
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| Platform ID |
GPL23436 |
| Series (1) |
| GSE98631 |
Flower development and sex determination in Vernicia fordii |
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| Relations |
| BioSample |
SAMN06909620 |
| SRA |
SRX2788575 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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