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Sample GSM2593159 Query DataSets for GSM2593159
Status Public on May 01, 2017
Title case9_T8_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 9
gender: Female
age: 74
primary tumor differentiation: moderately differentiated
tumor or normal colon location: ascending colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 75
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.7551859
rs3094315-131_B_F_1857408493 0.009533613 -0.2723973
rs3131972-131_T_R_1857421833 1 0.02052951
rs12562034-131_B_R_1858595326 0.5526588 0.1856339
rs12124819-131_B_R_1857380364 0 0.7897881
rs11240777-131_T_F_1857259998 0.5014025 0.005543001
rs6681049-131_T_R_1858018399 0.9970982 -0.04165952
rs4970383-131_T_R_1857736617 1 -0.09458389
rs4475691-131_T_R_1857599365 0.9851191 -0.2042602
rs7537756-131_T_F_1857298910 0.03459161 -0.05773688
rs2272756-131_B_F_1857180676 0.99098 0.1795752
rs17160698-131_T_R_1856941558 0 0.005486806
rs3748597-131_T_R_1853475664 1 0.06596532
rs13303106-131_T_F_1857538098 0.9816163 -0.1033336
rs28415373-131_T_R_1857337676 0.9839652 0.004786754
rs28391282-131_T_F_1857337024 1 -0.06877132
rs13303118-131_B_F_1857538100 5.25E-05 -0.02283164
rs2341354-131_T_F_1858039701 0.9854317 -0.09822088
rs6665000-131_T_F_1857014860 0.02104845 -0.3070689
rs2341362-131_B_R_1857209587 1 0.3487769

Total number of rows: 600129

Table truncated, full table size 27838 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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