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Sample GSM2593157 Query DataSets for GSM2593157
Status Public on May 01, 2017
Title case9_T3_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 9
gender: Female
age: 74
primary tumor differentiation: moderately differentiated
tumor or normal colon location: ascending colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 73
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.7464396
rs3094315-131_B_F_1857408493 0.006837516 -0.1192499
rs3131972-131_T_R_1857421833 0.9997483 -0.02093972
rs12562034-131_B_R_1858595326 0.5274262 0.4596384
rs12124819-131_B_R_1857380364 0.000774266 1.072153
rs11240777-131_T_F_1857259998 0.4825937 -0.0994334
rs6681049-131_T_R_1858018399 0.9713479 0.02110367
rs4970383-131_T_R_1857736617 0.9938923 -0.1599796
rs4475691-131_T_R_1857599365 0.9861342 -0.03904958
rs7537756-131_T_F_1857298910 0.01056383 -0.01216431
rs2272756-131_B_F_1857180676 0.9958384 0.1419172
rs17160698-131_T_R_1856941558 0.03477108 -0.1214354
rs3748597-131_T_R_1853475664 1 0.01415723
rs13303106-131_T_F_1857538098 0.9715753 -0.02854713
rs28415373-131_T_R_1857337676 0.9852148 -0.1067024
rs28391282-131_T_F_1857337024 1 -0.2047712
rs13303118-131_B_F_1857538100 0.003468323 -0.2349863
rs2341354-131_T_F_1858039701 0.9942212 -0.002631583
rs6665000-131_T_F_1857014860 0.01306792 -0.1515632
rs2341362-131_B_R_1857209587 1 0.2248063

Total number of rows: 600129

Table truncated, full table size 28007 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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